PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Nin-like | ||||||||
Protein Properties | Length: 180aa MW: 20241.3 Da PI: 10.4387 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 48.2 | 2.1e-15 | 2 | 41 | 6 | 45 |
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWP 45 +le++sk+F p++dAAk+ gv+ ++ KriCR +GIkRW DCAR_030924 2 NLENVSKHFGRPLNDAAKSFGVSRSTFKRICRGLGIKRWQ 41 7899***********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 12.411 | 1 | 71 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.7E-15 | 1 | 40 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:3.10.20.240 | 1.8E-17 | 90 | 169 | No hit | No description |
SuperFamily | SSF54277 | 1.89E-18 | 90 | 173 | No hit | No description |
SMART | SM00666 | 3.6E-19 | 91 | 173 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 20.99 | 91 | 173 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.1E-16 | 94 | 170 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MNLENVSKHF GRPLNDAAKS FGVSRSTFKR ICRGLGIKRW QSGKRRMNGN FSSRLGKGIN 60 QEQPGRRNFG STSMAAVNET VVVHSSQDLN KMIVKATYKD VAIRFKLPDL SGIAELENNV 120 IERLHLKRNN FTIKYQDEEG DLVLIACDKD VRECIEISRS LKETTVKLLL DLPLNHNAL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017226040.1 | 1e-119 | PREDICTED: protein NLP7-like isoform X1 | ||||
Refseq | XP_017226041.1 | 1e-119 | PREDICTED: protein NLP7-like isoform X2 | ||||
TrEMBL | A0A175YIK0 | 1e-129 | A0A175YIK0_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12836 | 2 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 5e-18 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030924 |