PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Nin-like | ||||||||
Protein Properties | Length: 819aa MW: 93356.1 Da PI: 5.9012 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 43.6 | 5.8e-14 | 519 | 561 | 2 | 44 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 ek+ s e ls++F p+ d+Ak g++ ++ Kr+CR +GIkRW DCAR_030922 519 EKKFSYESLSQHFGRPLDDVAKRFGISRSTFKRKCRDLGIKRW 561 79999************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.402 | 504 | 589 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.3E-12 | 523 | 561 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.84E-17 | 613 | 701 | No hit | No description |
PROSITE profile | PS51745 | 19.189 | 617 | 698 | IPR000270 | PB1 domain |
SMART | SM00666 | 7.3E-19 | 617 | 698 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 5.6E-18 | 619 | 694 | No hit | No description |
Pfam | PF00564 | 3.3E-14 | 623 | 697 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 819 aa Download sequence Send to blast |
MIINFGHDEV TANDAATRNI LIQFWEASTE ATEGGRRYCE LTIPENSFEI LPYEVGGLSL 60 YRMHSISCTH RIQLDDEEDD YIIQSKQQEG VISRVFRYKR PEMTPHISFY SLHEYPHREF 120 ALSCGIQPSL CFPLFKTADC SGHPRGVVEL VSTCEQDLEN FKQYFESCFF VQDLNPALWQ 180 MDHVLTLVCQ KFPLHLAQFW VLTNPKLGAL SVMSQKSNLD SEELAPLCRF KDACLQTHLN 240 IGEGLVGKTC LFRKSFSCRN IKKFNITNYP LAHYARSCVS IACFTIFLRS FFPPFGECVL 300 EFFLPSQELS NYYPQTMSNS LLTTVKEHLP YYTFDLGEEL GEVPTLEVIN SSSTREIFKR 360 THKNAVAVIN LDELEESSVK LIEPQSLTPK PNRSKEIIDE ANTMEINHFS LEITLEEAIR 420 NREYTVAARR VDELLEDVGH DKTTAVGSSS QTRISLPHQE VEEEKLTADT SVQKLILTED 480 VFRIKNKGII VGAENVDRPI QFVSKTSLQD ELETEKQAEK KFSYESLSQH FGRPLDDVAK 540 RFGISRSTFK RKCRDLGIKR WQYGRRSTDD NVSSKLRERL NAKEPSKRRY TCSGISSVQD 600 KCLNKVATAD KRQDPKKMIV EATYYDATIR FELPGFTIAE LEDNINERLH LERQSFVIKY 660 EDDEGDWISI ACDEDLQECV EISKSSNNTT IKMSLDPRIN PQAQCISVYP SIVAGKFEWN 720 SLGVMSPHQF ILSNYSMQLN VAFINIAPTR ARENNNHAIV GILGIAVTVL LSALQLKYQA 780 GTGSAFQDHP RAMVFAIASF LVFCLVCDLE QYFRSTHK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017226060.1 | 0.0 | PREDICTED: protein NLP7-like | ||||
TrEMBL | A0A175YIN2 | 0.0 | A0A175YIN2_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12836 | 2 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 8e-31 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030922 |