PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030918 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Nin-like | ||||||||
Protein Properties | Length: 394aa MW: 44462.1 Da PI: 5.6132 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 36.6 | 8.8e-12 | 223 | 265 | 4 | 46 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 +is e ls++F +++ +A gv+ + Kr+CR GIkRW + DCAR_030918 223 TISKESLSQHFGKSLDEAREIFGVSRSEFKRRCRDVGIKRWQY 265 6999*************************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 11.9 | 204 | 293 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.5E-10 | 223 | 263 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51745 | 16.251 | 308 | 382 | IPR000270 | PB1 domain |
SMART | SM00666 | 4.0E-15 | 308 | 388 | IPR000270 | PB1 domain |
Pfam | PF00564 | 5.3E-15 | 309 | 389 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.5E-14 | 312 | 389 | No hit | No description |
SuperFamily | SSF54277 | 5.56E-14 | 312 | 391 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MLAAADGEQL GQADVVLEIQ KCATNIYLYE EISITATSKR TPEGVEHIIS LDELEQHMPS 60 KSIEPRSVTS QPTKSVKILE DERNTVISEL RGRDGAMKTH HSALGGTSEE IVKEHAVAVE 120 RDEPIEESAA DDFEYAARYE DVGHAMITAS QPSSLQTMKS LPQQVNMKKM VLENEGDAST 180 QLPCNLQRCE DGTEQEEQVL EMQKSTPIIN SHKVDKLQEA PPTISKESLS QHFGKSLDEA 240 REIFGVSRSE FKRRCRDVGI KRWQYGKRKM GSNSSSKHKQ RLNNGYSTNM PHVQDQPVIS 300 HTTRVLNTMD EKVMYNGLIL RFELPELSGI SELEDNVIKR LHLDKQSFSI KYEDDGGHWV 360 LITCDEDVQY CMKMSRLWKK TTINMLVSQT ANH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225463.1 | 0.0 | PREDICTED: uncharacterized protein LOC108201687 | ||||
TrEMBL | A0A175YII5 | 0.0 | A0A175YII5_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12836 | 2 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 4e-15 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030918 |