PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030911
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 440aa    MW: 49487.8 Da    PI: 5.6378
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030911genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1462e-45181441128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  l pGfrFhPtdeelv +yL+ +  gk++e+ +++ke+d+yk+ePwdLp +++ ++ +ewyfFs+ d +y + +r+nr+t++g+Wk tgkd  v +  g
  DCAR_030911  18 LVPGFRFHPTDEELVGFYLRSRFCGKQFEI-QILKEIDVYKHEPWDLPgHSLLGGIDEWYFFSPVDMNYGNRSRTNRTTQAGFWKPTGKDCCVRH-MG 113
                  579***************************.89***************767777889************************************99.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  e++g+kktLvf++g  p g +t+W+mheyrl
  DCAR_030911 114 ETIGMKKTLVFHHGGPPYGIRTNWTMHEYRL 144
                  9****************************98 PP
2RWP-RK50.92.9e-16259301244
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 
                  e+ei++e+ls++F ++++dAA++  v+ ++ KriCR +GIkRW
  DCAR_030911 259 ENEINFEVLSEHFGKSLEDAANSFHVSRSTFKRICRSHGIKRW 301
                  789**************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5314169IPR003441NAC domain
PROSITE profilePS5100551.66318169IPR003441NAC domain
PfamPF023659.7E-2520144IPR003441NAC domain
PROSITE profilePS5151911.229243329IPR003035RWP-RK domain
PfamPF020423.4E-14262301IPR003035RWP-RK domain
SMARTSM006661.9E-22352434IPR000270PB1 domain
PROSITE profilePS5174520.963352434IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.4E-20352431No hitNo description
SuperFamilySSF542771.01E-18352436No hitNo description
PfamPF005641.9E-17353432IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDRRISAAAK NEYPISGLVP GFRFHPTDEE LVGFYLRSRF CGKQFEIQIL KEIDVYKHEP  60
WDLPGHSLLG GIDEWYFFSP VDMNYGNRSR TNRTTQAGFW KPTGKDCCVR HMGETIGMKK  120
TLVFHHGGPP YGIRTNWTMH EYRLVDTELQ QAGVTQKKDA FVLCRIFKKS GLGAPNGDLE  180
DLFIEEEWQE GATLMVPGGE AEEDVGHVAN VSDGRTGGND IDQQLLIVAD DIHDQGLNVG  240
AEQRTTCLEE TSVEGNKHEN EINFEVLSEH FGKSLEDAAN SFHVSRSTFK RICRSHGIKR  300
WQSGKSRMGI QSSSKLRSVN NKEPSKTNYV YPGIPPLQEI AIVADTSQDI NKIDVKATYN  360
GVAIRFELPN SSGMAELEDN VIERLNLERG TFSIKYKDEE GDWVLIACDK DVQKCIEISR  420
SLRETIIKML VDLPVSRAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-451816920168NAC domain-containing protein 19
3swm_B2e-451816920168NAC domain-containing protein 19
3swm_C2e-451816920168NAC domain-containing protein 19
3swm_D2e-451816920168NAC domain-containing protein 19
3swp_A2e-451816920168NAC domain-containing protein 19
3swp_B2e-451816920168NAC domain-containing protein 19
3swp_C2e-451816920168NAC domain-containing protein 19
3swp_D2e-451816920168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227194.10.0PREDICTED: NAC domain-containing protein 40-like isoform X1
TrEMBLA0A175YKG70.0A0A175YKG7_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000797914e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12836219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.13e-67NAC domain containing protein 50