PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_030793

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 341aa MW: 37206.2 Da PI: 7.2968

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_030793	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	50.8	3.6e-16	101	132	24	55
G2-like 24 sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPktil++m+vkgLtl+h+kSHLQkYRl DCAR_030793 101 RTQATPKTILRTMGVKGLTLYHLKSHLQKYRL 132 578****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.31E-6	96	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-10	102	133	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	8.6E-15	102	133	IPR009057	Homeodomain-like
Pfam	PF14379	2.5E-26	176	222	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MYSAIHSLSE MDGDGEFHGS LDGSNVVVGG DPRLEGYLVG DILNLFTSRF NRSSAVKAGY 60 QALKSQVIGP FEGALSLWPC RSRVEGESTA VCVSRHHMAS RTQATPKTIL RTMGVKGLTL 120 YHLKSHLQKY RLGKQSCKEL AENSKDASCI AESHDTDLST SASSRIAAQN LNDGYHVTEA 180 LRVQMEVQKR LHEQLEVQHR LQLRIEAQGK YLQSILEKAC KALNDQTLAS VGLEAAREEL 240 SELAIKVAND CQQVMTVSSL SDVAATLERK NLTNMHARIG DCSVDSCLTT NESPVSPIGV 300 RLQAGALKKR PRPRPISSDA DLSPLQSSLP QMEWMMSDIS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	312	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017227106.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q94A57	1e-81	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A175YHQ6	0.0	A0A175YHQ6_DAUCS; Uncharacterized protein
STRING	XP_002518104.1	1e-113	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-74	G2-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_030793

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]