PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GATA | ||||||||
Protein Properties | Length: 157aa MW: 17016.2 Da PI: 9.4995 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.6 | 8.2e-19 | 35 | 68 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ CgttkTplWR gp g+k+LCnaCG++ rk++ DCAR_030484 35 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKRK 68 ********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.66E-13 | 29 | 69 | No hit | No description |
PROSITE profile | PS50114 | 12.73 | 29 | 65 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.7E-15 | 29 | 81 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 33 | 69 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.86E-12 | 34 | 69 | No hit | No description |
Pfam | PF00320 | 1.5E-16 | 35 | 68 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 35 | 60 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MADSSDRGSD CDENITKACD KVVRDEAPNQ GAKTCADCGT TKTPLWRGGP AGPKSLCNAC 60 GIRSRKRKRA LMGLSNKEEK KPKKNNSNAS TITSSDGSSS NNGEDVVERR FLCVDSENVL 120 QRPRSSMCKK RRKFGEEERR AAMLLMALSC GSVFAY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 132 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017224313.1 | 1e-111 | PREDICTED: GATA transcription factor 16 | ||||
TrEMBL | A0A175YH98 | 1e-109 | A0A175YH98_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.005G065300.1 | 1e-42 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-21 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030484 |