PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030479
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CAMTA
Protein Properties Length: 631aa    MW: 71202.1 Da    PI: 5.9347
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030479genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1159.66.1e-50301463118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e k rwl+++e++aiL n++ +++  ++ + p+ g+++L++r+k+r+frkDG+swkkkkdgktv+E+he+LKvg+ e +++yYah+++n+tf rrcy
  DCAR_030479  30 EEaKGRWLRPNEVHAILCNHKYFNVFVKPVNFPSGGTIVLFDRRKLRNFRKDGHSWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNTTFVRRCY 127
                  45499********************************************************************************************* PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  wlL+++le+ivlvhy+e++
  DCAR_030479 128 WLLDKKLENIVLVHYRETQ 146
                  ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.22425151IPR005559CG-1 DNA-binding domain
SMARTSM010765.1E-7128146IPR005559CG-1 DNA-binding domain
PfamPF038599.6E-4431144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.22E-11362448IPR014756Immunoglobulin E-set
SuperFamilySSF484031.15E-8544609IPR020683Ankyrin repeat-containing domain
CDDcd002041.83E-7545608No hitNo description
Gene3DG3DSA:1.25.40.201.5E-6550609IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029710.312554608IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MESSAQGLLD ASEIHGFRTL QELDISNIME EAKGRWLRPN EVHAILCNHK YFNVFVKPVN  60
FPSGGTIVLF DRRKLRNFRK DGHSWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNT  120
TFVRRCYWLL DKKLENIVLV HYRETQESQG SPIASINSNS CSALSEQPAW LLPEESDSGV  180
VRAYSASTQA PIGNSTEAPN KFIQHHEIRL HEINTLEWDE LVVPDDPNKL TISDEGNILC  240
FEQRSSEFET NGHKSYINDS NNSLFESNGR VDLPLINGSK AVNTGTDDSL RIINKDGLQT  300
QDSIGRWMTY IMADSTNPEV ADDPNLESFI STGQDLSTFM NQTKPSMLTD HQNLTCPEQM  360
FTITDISPAS ALSAEETKIL VVGYFHQDPS PLAKSNLLCV CGDECISADL VQAGVYRSFV  420
SPHKPGLVDL YLSFDGQNPI SQVVTFEYHC VTEKLMNLSE NKLKEEFQYQ MRLSHLLFSA  480
SNRLTILSSK PGRNALKEAK IFIHKTCQIS DNWTSLVKSI NSSNFSYLRA KDSLFEITLQ  540
NRLHEWLLDR IVEGSEISVR DDQGLGVIHY CAILGYTWAV YPFSLSGLSL DYRDKYGWTA  600
LHWASSYGSQ INTALVASWL TLMVSHLGER *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17188RRKLRNFRKDGHSWKKKK
27287RKLRNFRKDGHSWKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226325.10.0PREDICTED: calmodulin-binding transcription activator 6-like isoform X2
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A175YI540.0A0A175YI54_DAUCS; Uncharacterized protein
STRINGVIT_05s0077g01240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45652232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]