PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030448
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 306aa    MW: 35175.8 Da    PI: 7.4727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030448genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27.1e-174188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd  l +++  +G g+W++ a+  g++Rt+k+c++rw++yl
      DCAR_030448 41 RGTWTAEEDMALMNYISHHGEGRWNSLAHSAGLKRTGKSCRLRWLNYL 88
                     89********************************************97 PP
2Myb_DNA-binding45.51.7e-1494137146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  T eE++ +++++  +G++ W++Ia+ ++ gRt++++k++w++
      DCAR_030448  94 RGDITLEEQLMILELHSHWGNR-WSKIAQQLP-GRTDNEIKNYWRT 137
                      67789*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0253692IPR017930Myb domain
SuperFamilySSF466894.49E-3039135IPR009057Homeodomain-like
SMARTSM007175.5E-144090IPR001005SANT/Myb domain
PfamPF002499.1E-164188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-224295IPR009057Homeodomain-like
CDDcd001678.25E-114388No hitNo description
PROSITE profilePS5129417.88493143IPR017930Myb domain
SMARTSM007174.3E-1393141IPR001005SANT/Myb domain
PfamPF002492.6E-1394137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2296142IPR009057Homeodomain-like
CDDcd001675.53E-1098137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSKKASYKDA RREINSKEVD EQMINSCDDQ EEETMIEDLR RGTWTAEEDM ALMNYISHHG  60
EGRWNSLAHS AGLKRTGKSC RLRWLNYLRP DVRRGDITLE EQLMILELHS HWGNRWSKIA  120
QQLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSKQFKDFMR YVWMPRLVER IQAARGDSTG  180
KATTGNSTFA KATDSNDNIN NLSVPSQVII MRETDSMMCD NLESMVQSET NNPSSLPPEN  240
ISTTASLTPD SCTNLFLDLI RVMLGPQKLI QKYAQNDVDS TIICAMSFFV YRCGFHSHQC  300
YAIFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-242613512120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225350.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A175YGY10.0A0A175YGY1_DAUCS; Uncharacterized protein
STRINGOB03G25040.15e-89(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-82myb domain protein 112