PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030443
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 347aa    MW: 39562 Da    PI: 4.9839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030443genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-173481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd  l +++  +G g+W++ ar  g++Rt+k+c++rw++yl
      DCAR_030443 34 RGPWTAEEDFALMNYISHHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 81
                     89********************************************97 PP
2Myb_DNA-binding51.13e-1687130146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      DCAR_030443  87 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4212985IPR017930Myb domain
SuperFamilySSF466896.36E-3132128IPR009057Homeodomain-like
SMARTSM007175.6E-143383IPR001005SANT/Myb domain
PfamPF002499.1E-163481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-223588IPR009057Homeodomain-like
CDDcd001675.12E-113681No hitNo description
PROSITE profilePS5129418.70786136IPR017930Myb domain
SMARTSM007171.3E-1486134IPR001005SANT/Myb domain
PfamPF002496.1E-1587130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2389135IPR009057Homeodomain-like
CDDcd001672.03E-7107130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDSKSGIYSE EVAEMIMNNC DDQEEETRIE DLRRGPWTAE EDFALMNYIS HHGEGRWNSL  60
ARSAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS KIAQHLPGRT  120
DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAASG TSSTAIATSG  180
DSTFGMATEA SCYDIDTINN ISSVPSHFPS QVTMMQQPNN MMCDNLESIV IQSTTNNSSS  240
LTPENSSTTA SSESYGRSQV STVSDITDCY NCPSLNLNPN QDYFFPDQLG FADTLISPMG  300
YYNQSFGYQS MEQKTRNPWM DSGELSDNLW SVEDIWLLNQ KLNNNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25291342106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225754.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A175YGR80.0A0A175YGR8_DAUCS; Uncharacterized protein
STRINGPOPTR_0010s15970.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.14e-85myb domain protein 108