PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_030328

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C3H

Protein Properties

Length: 713aa MW: 79308.6 Da PI: 6.1967

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_030328	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.4e-07	117	139	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C Gd C+F+Hgp DCAR_030328 117 VPCIFFQK-GYCLKGDMCPFMHGP 139 79****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.052	24	53	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	4.0E-11	25	79	No hit	No description
SMART	SM00356	0.012	25	52	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.338	55	81	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0036	55	80	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.774	113	140	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.8E-6	114	139	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-6	115	138	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-4	116	139	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-4	117	139	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MLGVKQNEEK EGPPHQITAE EEALKRNTDC VYFLASPLTC KKGIECEYRH SDIARLNPQD 60 CYFWLNGNCL NPKCAFRHPP LDGLLGTQVT TSLNLPPSHT MVPVSSQGLN VPGKQSVPCI 120 FFQKGYCLKG DMCPFMHGPY SLNNKATQSA GATPVPESQP NKKTFGGGLG NHTQVQKLSQ 180 GNAPKSANLP TQEKSADVLA KVPLRNRIST GRSASIATGL DNELPQYRPG NVHSFSNGNL 240 VSRSNRNHQV HIVEDQSVSN VKDADEVSRE LSPGFDVLVD DELRDSEYYP DEDQFGRSTG 300 HNGMNLNASN EYENKRSGDY GPVADVDRDL YDKRNYDSFE RLQGHSGRDV QRSSERVLGG 360 PAYTHRRRYP RADSPGQING SDLRHHLAKQ KRNTGLRSII SRDRTLLNSA DDRSFQAPRR 420 DLLPTHDTMV SSRLQGRIKL PGRSASPIPP LSENEIDRAR NRSRLSAERP LGRLRDRIKG 480 RVQEDFINDR NFRGSRIRRD IVDDNNAAFS GPKSLSELKV AKTSEIYEKH PSERMSHGKR 540 KYQKLEEGQL GEGDVSFEGP MPLSEILKRK RGGNVVSQES GSTTAEEHNQ MEIKQHLMIP 600 TEAKESNDVL FSAAKNEGSI PAAGKVVVTE GNNKLHEGQP SLQRSTSELQ IEDGMIGDEA 660 FDQKGDDFDY DEQADGKDYN LDDVENGDPE DDYFDEDDDA DDFAKKMGVV FS*

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MLGVKQNEEK EGPPHQITAE EEALKRNTDC VYFLASPLTC KKGIECEYRH SDIARLNPQD  60
CYFWLNGNCL NPKCAFRHPP LDGLLGTQVT TSLNLPPSHT MVPVSSQGLN VPGKQSVPCI  120
FFQKGYCLKG DMCPFMHGPY SLNNKATQSA GATPVPESQP NKKTFGGGLG NHTQVQKLSQ  180
GNAPKSANLP TQEKSADVLA KVPLRNRIST GRSASIATGL DNELPQYRPG NVHSFSNGNL  240
VSRSNRNHQV HIVEDQSVSN VKDADEVSRE LSPGFDVLVD DELRDSEYYP DEDQFGRSTG  300
HNGMNLNASN EYENKRSGDY GPVADVDRDL YDKRNYDSFE RLQGHSGRDV QRSSERVLGG  360
PAYTHRRRYP RADSPGQING SDLRHHLAKQ KRNTGLRSII SRDRTLLNSA DDRSFQAPRR  420
DLLPTHDTMV SSRLQGRIKL PGRSASPIPP LSENEIDRAR NRSRLSAERP LGRLRDRIKG  480
RVQEDFINDR NFRGSRIRRD IVDDNNAAFS GPKSLSELKV AKTSEIYEKH PSERMSHGKR  540
KYQKLEEGQL GEGDVSFEGP MPLSEILKRK RGGNVVSQES GSTTAEEHNQ MEIKQHLMIP  600
TEAKESNDVL FSAAKNEGSI PAAGKVVVTE GNNKLHEGQP SLQRSTSELQ IEDGMIGDEA  660
FDQKGDDFDY DEQADGKDYN LDDVENGDPE DDYFDEDDDA DDFAKKMGVV FS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017226931.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBL	A0A175YGL6	0.0	A0A175YGL6_DAUCS; Uncharacterized protein
STRING	XP_008220996.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4024	16	33

Link Out ? help Back to Top
Phytozome	DCAR_030328