PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030168
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 263aa    MW: 30220.8 Da    PI: 6.7842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030168genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-171865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++ +G g+W+  a+  g++Rt+k+c++rw++yl
      DCAR_030168 18 RGPWTFEEDSLLTHYITSHGEGRWNVLAKSSGLKRTGKSCRLRWLNYL 65
                     89********************************************97 PP

2Myb_DNA-binding49.41e-1571114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++ +++++ ++G++ W++Ia++++ gRt++++k++w++
      DCAR_030168  71 RGNLTPQEQLAILELHSKWGNR-WSKIAAELP-GRTDNEIKNYWRT 114
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6241365IPR017930Myb domain
SuperFamilySSF466891.65E-2916112IPR009057Homeodomain-like
SMARTSM007174.0E-141767IPR001005SANT/Myb domain
PfamPF002492.0E-141865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-221972IPR009057Homeodomain-like
CDDcd001672.83E-92065No hitNo description
PROSITE profilePS5129424.7566120IPR017930Myb domain
SMARTSM007171.9E-1470118IPR001005SANT/Myb domain
PfamPF002491.2E-1471114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2373119IPR009057Homeodomain-like
CDDcd001671.01E-975114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSSVNLSGSS EEESELRRGP WTFEEDSLLT HYITSHGEGR WNVLAKSSGL KRTGKSCRLR  60
WLNYLKPDIK RGNLTPQEQL AILELHSKWG NRWSKIAAEL PGRTDNEIKN YWRTRVQKQA  120
RQLKIDCNSK RFLETLKHFW MPRLVEKMGQ TSSQSQSSSS LSSTTNTQNS ETPGLLTVPQ  180
QVKYTPYQAT NENPSSSHCS SDSMKKQSEK ECYHVDIDNF NVEDFMSGDI LMPDCQVEAI  240
DWINSEDAAT YWNMDELWEL KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-25151201105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224675.10.0PREDICTED: transcription factor MYB108
SwissprotQ9C9G75e-82MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A175YG600.0A0A175YG60_DAUCS; Uncharacterized protein
STRINGSolyc05g009230.1.13e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.12e-74myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]