PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_030168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 30220.8 Da PI: 6.7842 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.2e-17 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++ +G g+W+ a+ g++Rt+k+c++rw++yl DCAR_030168 18 RGPWTFEEDSLLTHYITSHGEGRWNVLAKSSGLKRTGKSCRLRWLNYL 65 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1e-15 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++ +++++ ++G++ W++Ia++++ gRt++++k++w++ DCAR_030168 71 RGNLTPQEQLAILELHSKWGNR-WSKIAAELP-GRTDNEIKNYWRT 114 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.624 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-29 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-14 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.83E-9 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 24.75 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 71 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 73 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-9 | 75 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MSSVNLSGSS EEESELRRGP WTFEEDSLLT HYITSHGEGR WNVLAKSSGL KRTGKSCRLR 60 WLNYLKPDIK RGNLTPQEQL AILELHSKWG NRWSKIAAEL PGRTDNEIKN YWRTRVQKQA 120 RQLKIDCNSK RFLETLKHFW MPRLVEKMGQ TSSQSQSSSS LSSTTNTQNS ETPGLLTVPQ 180 QVKYTPYQAT NENPSSSHCS SDSMKKQSEK ECYHVDIDNF NVEDFMSGDI LMPDCQVEAI 240 DWINSEDAAT YWNMDELWEL KK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-25 | 15 | 120 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017224675.1 | 0.0 | PREDICTED: transcription factor MYB108 | ||||
Swissprot | Q9C9G7 | 5e-82 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A175YG60 | 0.0 | A0A175YG60_DAUCS; Uncharacterized protein | ||||
STRING | Solyc05g009230.1.1 | 3e-95 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25340.1 | 2e-74 | myb domain protein 116 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_030168 |
Publications ? help Back to Top | |||
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