PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030086
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 302aa    MW: 33672.8 Da    PI: 5.4402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030086genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14120166354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  DCAR_030086 120 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHLKEL 166
                  79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.958117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-12120166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-14121175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-14121173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-5130169No hitNo description
Gene3DG3DSA:3.30.70.2606.0E-4203255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQQQNMSDAY FQAGGVGGSS MMYPEVMPWT LPHGFNPVHF NPNPIRDPDT FLPPQPPSQY  60
GAMFNRRSFA SYDTSSTDHL RFISDTVLGQ MGSGPFGLQA ELSKLTAQEI MDAKALAASK  120
SHSEAERRRR ERINNHLAKL RSLLPSTTKT DKASLLAEVI QHLKELKRQT SIIAESSAIP  180
TESDELTVDN EEDEDGRFVI KASLCCEDRT DLLPDLIKTL KAMRLKTLKA EITTLGGRVK  240
NVLFITGDDQ ELNRDDDEQQ QPHEYFVSSI QEAFRAVMEK SNGDESSPGS VKRQRTNINI  300
I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224425.10.0PREDICTED: transcription factor bHLH30 isoform X1
RefseqXP_017224426.10.0PREDICTED: transcription factor bHLH30 isoform X1
SwissprotQ9S7Y14e-96BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A175YGM90.0A0A175YGM9_DAUCS; Uncharacterized protein
STRINGPOPTR_0010s14010.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]