PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029776
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 310aa    MW: 35282.7 Da    PI: 6.2486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029776genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.1e-14651146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  ++Rt+k+c++rw +
      DCAR_029776  6 KGPWKAEEDEVLINHVKKYGPKDWSSIRSKGLLRRTGKSCRLRWVN 51
                     79*************************888779***********87 PP
2Myb_DNA-binding431.1e-1362101344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+   +++ +++G++ W++Ia +++ gRt++++k++w
      DCAR_029776  62 KFSAEEERTVIELQAEFGNK-WARIATYLP-GRTDNDVKNFW 101
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.91157IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-21354IPR009057Homeodomain-like
SuperFamilySSF466891.45E-284101IPR009057Homeodomain-like
SMARTSM007171.9E-12555IPR001005SANT/Myb domain
CDDcd001674.29E-12853No hitNo description
PfamPF139213.4E-12959No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1855107IPR009057Homeodomain-like
PROSITE profilePS5129417.98958109IPR017930Myb domain
SMARTSM007178.2E-1359107IPR001005SANT/Myb domain
CDDcd001672.79E-1062101No hitNo description
PfamPF002491.1E-1262101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGEMKKGPWK AEEDEVLINH VKKYGPKDWS SIRSKGLLRR TGKSCRLRWV NKLRPDLKNG  60
VKFSAEEERT VIELQAEFGN KWARIATYLP GRTDNDVKNF WSSRQKRLAR ILQTPQAPKS  120
HKTDREGPVI HDVPTVKASK LSSLTKEETS PINLFCSPSF TVHNLKPISA VPFPEPELNS  180
NMCYFEQNLL QPELDIMETK SWQDHRQQIP LSFQAKHPQL QTEVPLASES QELIPQLGEP  240
NFFEVFENGS DSGGNNPHLQ YVSSYGTEGS CGNDGWKEND NPVTPDSFIH DFPIDMFDHL  300
DMLPSPPEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-28310724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226133.10.0PREDICTED: transcription factor MYB32
TrEMBLA0A175YFR40.0A0A175YFR4_DAUCS; Uncharacterized protein
STRINGXP_009630342.11e-103(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-76MYB family protein