PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029723
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 471aa    MW: 54349.8 Da    PI: 6.5239
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029723genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1389144262
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk 62 
                  W++++vl L+++r++m++++ +       We+vs+km+e gf+rs+++Ckek+e   +++ 
  DCAR_029723  89 WSNDQVLSLLKIRSSMDSWFPDF-----TWEHVSRKMEEFGFKRSAEECKEKFEAETRDFN 144
                  ********************998.....9*************************9988886 PP
2trihelix94.97.6e-30363454186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+k+evlaLi++r ++ ++ ++++       +++ lWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  DCAR_029723 363 RWPKDEVLALINMRCKLYTDNGNSNeegaaggSRGSLWERISQGMMELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SVDSRTCPYFQQLS 454
                  8*************966555554433344455*********************************************8.78889*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172485142IPR001005SANT/Myb domain
PfamPF138373.0E-987146No hitNo description
PROSITE profilePS500905.9788140IPR017877Myb-like domain
PROSITE profilePS500906.574356427IPR017877Myb-like domain
SMARTSM007170.026360429IPR001005SANT/Myb domain
PfamPF138374.7E-20362455No hitNo description
CDDcd122033.04E-23362434No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MFGVPQEQFH QLIASSRTLS SLPINPLPFS SSTPHPFPIN FDAYPSSSPS QFHHLHQPPL  60
LLPNKSQHGG DNDGDKKGEE GATLLMDPWS NDQVLSLLKI RSSMDSWFPD FTWEHVSRKM  120
EEFGFKRSAE ECKEKFEAET RDFNTLCFNK PRFDSELEEL YHVDKMQKKN EDQDKDEQGD  180
LLAGNVAIHN LPEQRAHEEL KKSTASSSSS KQSQERKKRK REKFEKFKEF CVEIVNKMMV  240
QQEEMHNKLL EDFVSRDDEY IAREEAWKQQ EMENFIKETE IRTREQAIAG DRQATITEIM  300
NNFTSQEAFK KIAVSYEELL KVSNTLSSLT SSYQNIIPQN SHLNPSLIKP QKPSNERDDT  360
GKRWPKDEVL ALINMRCKLY TDNGNSNEEG AAGGSRGSLW ERISQGMMEL GYKRSAKRCK  420
EKWENINKYF RKTKDVNKKR SVDSRTCPYF QQLSSLYDQG TLVVAPDTSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RKKRKR
2215222RKKRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224504.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLA0A175YES70.0A0A175YES7_DAUCS; Uncharacterized protein
STRINGXP_007144820.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.15e-65Trihelix family protein