PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029462
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 219aa    MW: 24352.8 Da    PI: 4.562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029462genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1890140255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g++++eIr p ++g  +r++lg+++t+e+Aa a+++a+ k++g
  DCAR_029462  90 RYRGVRRRP-WGKFASEIRNPAKRG--ARIWLGTYDTPEDAALAYDKAAFKIRG 140
                  8********.**********97765..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-3189150No hitNo description
SMARTSM003804.5E-3790154IPR001471AP2/ERF domain
PfamPF008475.7E-1390140IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2290149IPR016177DNA-binding domain
PROSITE profilePS5103224.13190148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-3190149IPR001471AP2/ERF domain
PRINTSPR003672.6E-1091102IPR001471AP2/ERF domain
PRINTSPR003672.6E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MCSQILSDSD FAVLESIRQH LLEDAVDFGS RNLSDNSVYE RNFSFGSTDS GAESGGSEDY  60
TSEWIDMLRT EETKQEVEAA SAKKQPEWKR YRGVRRRPWG KFASEIRNPA KRGARIWLGT  120
YDTPEDAALA YDKAAFKIRG SRAKVNFPNL LRPNLSEKSN ANCNKSTSQS ESSLSLSPSS  180
SSENGSVKNT STCIDSPVED IEDFFLLTDE DLFLMDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2989148160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225889.11e-160PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A175YDY91e-158A0A175YDY9_DAUCS; Uncharacterized protein
STRINGSolyc01g090300.2.11e-43(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-34ethylene-responsive element binding factor 13