PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029302
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 411aa    MW: 46551.7 Da    PI: 7.1373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029302genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l++ ++++G g+W+++++  g+ R++k+c++rw +yl
      DCAR_029302 14 KGLWSPEEDDKLIKHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP

2Myb_DNA-binding40.94.8e-1367109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg ++++E+  ++++++ lG++ W+ Ia+ ++ gRt++++k+ w+
      DCAR_029302  67 RGTFSAQEENMIIELHAVLGNK-WSQIAAQLP-GRTDNEIKNLWN 109
                      899*******************.*********.*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.139965IPR017930Myb domain
SuperFamilySSF466896.36E-2912108IPR009057Homeodomain-like
SMARTSM007173.5E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001671.55E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129418.52866116IPR017930Myb domain
SMARTSM007171.1E-1166114IPR001005SANT/Myb domain
PfamPF002494.8E-1267109IPR001005SANT/Myb domain
CDDcd001674.61E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGRHSSCYKQ KLRKGLWSPE EDDKLIKHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SAQEENMIIE LHAVLGNKWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKLLS EVENDKDQKA SASNNKASEQ DSYELNYETS NQELVEEKPN HPYTLIDNLT  180
APTHEFFLNR FVSSHDQAST SKPQDLGNYL SFDYGRSDIG LTVNQNTSNL FYNPVPKSSE  240
MMSELIASSP AIIPSISNTF LSSPSSMKPS ISLPDSDPQM GSFHLLNRLQ NWDTNTLTNS  300
NTSDDSFRWG AQDVGKLEKD QGHDIHSVQG QHDNIKWNEY LQTPFLHSAL QNQNSQELYN  360
GQDTKPETQF MANLPWHQSQ QPQPQPMQAA ATDVYGKHFH RLPATFGQFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224489.10.0PREDICTED: transcription factor MYB86-like
RefseqXP_017224498.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A175YE640.0A0A175YE64_DAUCS; Uncharacterized protein
STRINGVIT_14s0060g00240.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.17e-97myb domain protein 61