PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029097
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HB-PHD
Protein Properties Length: 1120aa    MW: 123162 Da    PI: 4.8882
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029097genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox421.5e-13841894356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +R +f ++ +++L + F++n+yp+++ +e LA++l+Lt +qV+ WF N R   +
  DCAR_029097 841 PRSSFGEQATQRLLQSFKENQYPQRTVKESLATELQLTIQQVSKWFENARHSFR 894
                  799***********************************************8776 PP
2PHD377.9e-13414469151
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ Cg+   + +++++lCdg C++ fH+ Cl+++l +e +p g   wlC+ C++k
  DCAR_029097 414 FCAKCGSkdVTLSNDIILCDGaCERGFHQFCLDPPLLREHIPAGdeGWLCPGCDCK 469
                  6999**964445********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-14404472IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-12411469IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.852412469IPR019787Zinc finger, PHD-finger
PfamPF006283.2E-10414469IPR019787Zinc finger, PHD-finger
SMARTSM002493.7E-9414467IPR001965Zinc finger, PHD-type
CDDcd155045.49E-24414466No hitNo description
PROSITE patternPS013590415466IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.0E-14824890IPR009057Homeodomain-like
SuperFamilySSF466894.71E-13835901IPR009057Homeodomain-like
PROSITE profilePS5007114.835836896IPR001356Homeobox domain
SMARTSM003892.2E-11838900IPR001356Homeobox domain
PfamPF000464.5E-11841894IPR001356Homeobox domain
CDDcd000861.94E-11841897No hitNo description
PROSITE patternPS000270871894IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MDAFLMQQCT KMEERSSTKP KELEQVHNTL TNGRCTPPGQ MDNVTAEDVQ KASAGTKVGV  60
NVSVGDKIVP SADDSIKLLP FGELPQDMKM CSPGPVEVQA ENQSKISPNS IKVTPDHNHK  120
FGSEMVNNEA EENHVIATEN TENGPIKGQN SEFGHINMEQ KGTLPEEVTP NNCLESSIPQ  180
IDTQSRIYSS DLLGSPTGDA ANDHIHLEQQ INNAPNSSGL EQLGPGQETA AEGSSHLEET  240
VEGTPVLPRN RPISMISSEG NIKVLSGKRK KNQNLLVSSS RTLRSRSQEK SKAPDTSNMV  300
TEGADSQKKK KRKKRMEKNK IDEYSRIRTH LRYLLHRIQY EKNFIDAYSG EGWKGQSLEK  360
LKPEKELQRA RSEIVRRKLK IRDLFQRLDL LCSEGRIPDN LFDSEGEIDS EDIFCAKCGS  420
KDVTLSNDII LCDGACERGF HQFCLDPPLL REHIPAGDEG WLCPGCDCKV DCLELLNDSQ  480
GTKILVTDSW EKVFAEEAAA AAAGKNLDDI SGLPSDDSED DDYNPDSPDL DENVQADVSS  540
SDESDNHSGA DDLRVLPQKE LFLGLPSDDS EDDDYDPSSL NYDQKSKMES SSSDFTSDSE  600
DLTVVVDKCK PSSEVQGPVT SSPDDVMEDE EGCGLPEEGD CASVYPRRQV KRLDYKKLHD  660
SRRILYLFLT ELFALAHVSL ILKEEYGNTS SDSSDEDYMD LALPNTKKNI SEEEDLLSPN  720
LEVTTENGKE SDDSEPDQKT NENTHNKRSS KTKFTVSGTN STPARSCKGS PTTGGKSTSR  780
LQKKVDVNGA YSTPARSCKD FAATSDKSTS SLKKKFDVDV TNSTPARSPK CSSATTRKGT  840
PRSSFGEQAT QRLLQSFKEN QYPQRTVKES LATELQLTIQ QVSKWFENAR HSFRHSRGRA  900
SDVAKITPDK VTPQKSSNLS ESDSRSVLNN TTCSEVKKKK QDEGTTAECC DKDTTSNMVA  960
EEGNGCNSSS TNPRKRKAKF GSEATEPNTS SETLEQNAEV NPQKTSKRKT KFGSEATELD  1020
TSSETPEQNA EVDPQKTSKR KAKFGSDATE PNTSSDIPKQ NEEANPPNTS KRKAKSGSEA  1080
TELDTSSESP KQNAEINTPK TQGVRKSSRI QSKSKESIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307312KKKKRK
2307314KKKKRKKR
3308314KKKRKKR
4309313KKRKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226930.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487860.0PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A175YCZ50.0A0A175YCZ5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.17e-87Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain