PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029052
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 297aa    MW: 33428.4 Da    PI: 9.0328
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029052genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19156204355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa+a+++a+ +++g
  DCAR_029052 156 FRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEAAARAYDRAAIEFRG 204
                  8*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.73E-20154211No hitNo description
SMARTSM003806.9E-38155218IPR001471AP2/ERF domain
PROSITE profilePS5103224.764155212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-31155212IPR001471AP2/ERF domain
PfamPF008471.5E-13156204IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22156212IPR016177DNA-binding domain
PRINTSPR003672.7E-11156167IPR001471AP2/ERF domain
PRINTSPR003672.7E-11178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MHNRPSNSHK SQPVNGSSSH QPPPSLPPPR LTYEQEVSVM VNALKNVISG ASLESSHDLR  60
FHPTDTTSDF RFLTAASVSG SVIRGSTSFM TEPETIAGVS GSASFVTEPE TCRFCNISGC  120
LGCDFFGVEE NDTKNSNKKG KNNVNAVTMK RKKKNFRGVR QRPWGKWAAE IRDPRKAARV  180
WLGTFETAEA AARAYDRAAI EFRGPRAKLN FSFADYNNSS SALKKQEEEI AKIREEEEKK  240
KEEKLRRNER EIMEKNKEKE WWRMSAGDDE FQKWMMMMDS CDQSCDSAGR TNIHSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22152211262ATERF1
3gcc_A1e-22152211262ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225714.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A175YCU90.0A0A175YCU9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-29redox responsive transcription factor 1