PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_028883 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24134.8 Da PI: 5.4458 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.3 | 3.2e-07 | 25 | 66 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ykGV+ +k + +W A++ + + + ++g++ t+ eAa a+++ DCAR_028883 25 LYKGVYEKKGKEKWYAQCSH---G--GENAYIGTYNTELEAALAYDK 66 59***98887788****666...2..399********99******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-10 | 25 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-11 | 25 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.47 | 25 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0021 | 25 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-4 | 26 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MASENPDDRK EFDPLVYGSK MPHKLYKGVY EKKGKEKWYA QCSHGGENAY IGTYNTELEA 60 ALAYDKRGRE LKRPEEKLNF PKFLTEHNPP AATEPALPIT NALSSSVQVN VPSGSSSSNA 120 GRGEKRKQIT ISKEEYDAYL PYHEARKIEF AQRGRNVSVS GVAIRSQSAN ISSAIMELIG 180 NPGEFKDVPD EELLSDAEKE FVESLLNQGT SSDDGKLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221124.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | A0A175YJF5 | 1e-159 | A0A175YJF5_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-07 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_028883 |