PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028794
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 374aa    MW: 40606.4 Da    PI: 6.427
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028794genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-154388147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l + v  +G ++W++Ia+ ++ gR++k+c++rw + 
      DCAR_028794 43 KGPWSPDEDVSLCEIVGNFGARNWSLIAKGIP-GRSGKSCRLRWCNQ 88
                     79******************************.***********985 PP
2Myb_DNA-binding53.46.1e-1796139247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++T eEd ++++a + +G++ W++Iar ++ gRt++ +k++w++ 
      DCAR_028794  96 NPFTDEEDRIILEAQAVHGNK-WASIARLLP-GRTDNAVKNHWNST 139
                      68*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6113789IPR017930Myb domain
SuperFamilySSF466891.09E-2841136IPR009057Homeodomain-like
SMARTSM007171.4E-114291IPR001005SANT/Myb domain
PfamPF002494.0E-154388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-244496IPR009057Homeodomain-like
CDDcd001673.08E-114587No hitNo description
PROSITE profilePS5129425.62390144IPR017930Myb domain
SMARTSM007173.5E-1694142IPR001005SANT/Myb domain
PfamPF002492.0E-1496139IPR001005SANT/Myb domain
CDDcd001679.61E-1397140No hitNo description
Gene3DG3DSA:1.10.10.608.0E-2397143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDNDLEMRDA PPGAGAQNPG AEKVAEKSAE KIATSQKPRQ RVKGPWSPDE DVSLCEIVGN  60
FGARNWSLIA KGIPGRSGKS CRLRWCNQLD PGLKHNPFTD EEDRIILEAQ AVHGNKWASI  120
ARLLPGRTDN AVKNHWNSTL KRRGYEFGKS KLEPGDWPED ASVEKSKASS EETLSCEDVN  180
SIKSLEKNVV NSVEVGGQNG VEGQAECQMS SEAKDPPTLF RPVARISAFN MYNPFDGLEP  240
VLPHTRLTSS QEPAFLPSDP DAGVGKYLKG AYGERLVPHQ CGYGCCSSTE KMSKSSLLGP  300
DFSDYSEPPS FSNLELAALA ADISKIAWHK SGFESSNLKA PPDYVSGRLM ITGGSHVKMG  360
YSDESRKSVH SHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39421436107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222783.10.0PREDICTED: myb-like protein AA
SwissprotQ425752e-91MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A175YJ880.0A0A175YJ88_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g01540.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.12e-86myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]