PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_028749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 526aa MW: 58431 Da PI: 4.8094 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 56.8 | 4.8e-18 | 390 | 462 | 1 | 73 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 l++lL++cA+av+++d ++a+ lL+++++++sp gd +qRla++f+ +L+arla++++++ kal++ + + ++ DCAR_028749 390 LRTLLISCAQAVAADDRRNANDLLKQIRQHSSPFGDGNQRLAHCFADGLEARLAGNGTQIHKALQCYKIPMNS 462 6789************************************************************998887554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.582 | 364 | 525 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-15 | 390 | 462 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MDALNGVQWG SWGNQSEIVF SDRKVVRGAR FEHGVPDQEL RRIENGFLGQ GQVDGRRIEN 60 GFLSQELSGI ELVPNPPTLT HVAPSSSVSA EDGSQEDCDF SDAILGYISQ VLMQEDMGDQ 120 TCMLQDSLDL QAAEKPFYDV LGKKYPPSPQ QGLPDLGDQY RFGLNEQDAV ADYGQFIDPY 180 WSNYPVDYNG SQVQTPLAST VTHTMVNPAN SSIKFIDGFL DSPISPLQVR DLYNESQSIW 240 QFKKGVEEAN KFLPSSNNTL VNYNFNELIP QDLQINTSEL ATEVERSNEL QYLPTGSRGR 300 KISHRDDIGI EQERTSKLAA VYQESTLRDD EFDTVLLCSE GKGKAVLESF RETLRNDKSK 360 FAEQIAQSKG FSRGKGRGKK QTKKKEVIDL RTLLISCAQA VAADDRRNAN DLLKQIRQHS 420 SPFGDGNQRL AHCFADGLEA RLAGNGTQIH KALQCYKIPM NSPIHTSELS SDDWYQMTVQ 480 AELSIEKGLA VAKFCEIDKK IQESGRDKKF GNRDGTTAPV VSGSF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017223681.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_017223682.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
TrEMBL | A0A175YJS7 | 0.0 | A0A175YJS7_DAUCS; Uncharacterized protein | ||||
STRING | XP_009804922.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 3e-61 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_028749 |