PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028712
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 1070aa    MW: 122238 Da    PI: 8.2079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028712genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.5e-08483528146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+ E+++l+  ++  G  +W  Ia+ + ++Rt+ qc  ++q 
      DCAR_028712 483 KNSWTKSEEKKLLYIIQHKGISNWIDIASSLRTNRTPFQCLAHYQR 528
                      679*****************************************96 PP
2Myb_DNA-binding46.96.3e-15536580146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT++Ede+l  av+ +G  +W+++a+ +  gRt+ qc +rw k
      DCAR_028712 536 KQNWTEDEDEKLRAAVATYGESSWESVASVFE-GRTGTQCSNRWTK 580
                      79******************************.***********87 PP
3Myb_DNA-binding22.52.7e-07590622235
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      g+W + Ed++l+ av+ +G ++W+++a++++ gR
      DCAR_028712 590 GKWIPNEDKRLKVAVTFFGAKSWRKVAHYVP-GR 622
                      6899***************************.99 PP
4Myb_DNA-binding445.2e-14629670447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT eEd++l +a +++G+  W++Ia+++   Rt++qc  rw  +
      DCAR_028712 629 WTSEEDQRLEEAYEEFGPS-WNKIASYVT-QRTDNQCLRRWKVL 670
                      *****************66.********9.***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.644382477IPR017877Myb-like domain
SMARTSM007174.4E-4386479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-11389405IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-11450490IPR009057Homeodomain-like
SuperFamilySSF466895.86E-15460527IPR009057Homeodomain-like
PROSITE profilePS500909.21478530IPR017877Myb-like domain
SMARTSM007171.9E-7482532IPR001005SANT/Myb domain
PfamPF002491.7E-6483528IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-12491536IPR009057Homeodomain-like
PROSITE profilePS5129422.755531586IPR017930Myb domain
SuperFamilySSF466891.08E-23533583IPR009057Homeodomain-like
SMARTSM007172.5E-14535584IPR001005SANT/Myb domain
PfamPF002491.2E-13536580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-18537586IPR009057Homeodomain-like
CDDcd001672.77E-11538580No hitNo description
SuperFamilySSF466897.18E-6577626IPR009057Homeodomain-like
PROSITE profilePS500905.935584622IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-6587626IPR009057Homeodomain-like
CDDcd001670.00894591622No hitNo description
PROSITE profilePS5129415.338621675IPR017930Myb domain
SMARTSM007171.1E-9625673IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-23627667IPR009057Homeodomain-like
CDDcd001674.92E-9629671No hitNo description
Gene3DG3DSA:1.10.10.602.4E-13629668IPR009057Homeodomain-like
PfamPF002497.3E-13629669IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MTSFCSATSL ISPPIISKSS APSVSSSCSS PVLSFPARRP ANCAGRGRVN VRRPAAMIRM  60
GEEEKLTRRN PLDFPIEWER PKPGRRPDIF PQFSPMKTPL PPPMPYDPPE EDEEEEEKKE  120
EEEDPEKEEG ENPESIGDYG GSSGVFLDDS SSESSDGDLE LYKNIRARFS GGKDDQEPLN  180
LKPICVLPPV SLDSDDDDCD GDFEILRDIQ RRFSDDCKEN CDGSVVTDLD KESLDCNVLD  240
SGVCGQEIEA DLVEPEVIDD CSPGREEETG LPKSAQAFLD AIKKNRLCQK YLRSKLMLVE  300
SRIEENVKLR NRVKALKGLQ FACRRRTGLE VSQKKDALLQ LVQGTKLRVN AKVNEKSTRV  360
MRFAPCENDH VMNYKAMVEK FWESVNRNKW TKQDDVNLVK GIKQQFQDML LQKTYENAEG  420
FSDSNEFDSI VASISDHDIT DENLNEFLPK VNWEQLASMY TKGRSGTECE ARWLNCTNPL  480
INKNSWTKSE EKKLLYIIQH KGISNWIDIA SSLRTNRTPF QCLAHYQRSL NPSLLKQNWT  540
EDEDEKLRAA VATYGESSWE SVASVFEGRT GTQCSNRWTK ALHPTRKRIG KWIPNEDKRL  600
KVAVTFFGAK SWRKVAHYVP GRDHVQYYWT SEEDQRLEEA YEEFGPSWNK IASYVTQRTD  660
NQCLRRWKVL FPEEFPKLQV ARKIKKIALP SNFVDREARR PALGPSDFVH LQLLDSALEA  720
KKTDSSKKRK RKSRQPVSSA KRTDSCERKS RKTFSSANNY VSKLRPAKQK KDAQQSCEGD  780
KPPIPEVHPA SKKSVWSRKK KTRSESSESF AAFSNSESKR KPCENESIDI KHKKVRNRMG  840
IDATKKRKTL IPSLEKNILT EKVKEVQVHT ESHETDVLSE HLDISIFGDC LQSPSRSPER  900
MLLNGDVAEP FFRDNNDERP LRCSTPEILE NLNPRASTVC RKRQRRLNSK QMRNVGYRDD  960
MTVSSVSNQL RRSQRIEKLK LRPNKCYKYQ SGKYDHMDYL TKTRICLCKG LSDVSEQTDE  1020
KFGDVKGEEG ENAMKRTLSR SEEKVEDGIG TESNLYSCSD LFISTGLLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-214526673155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-214526673155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1726731KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223494.10.0PREDICTED: uncharacterized protein LOC108199972
RefseqXP_017223495.10.0PREDICTED: uncharacterized protein LOC108199972
RefseqXP_017223496.10.0PREDICTED: uncharacterized protein LOC108199972
RefseqXP_017223497.10.0PREDICTED: uncharacterized protein LOC108199972
RefseqXP_017223498.10.0PREDICTED: uncharacterized protein LOC108199972
TrEMBLA0A175YJG80.0A0A175YJG8_DAUCS; Uncharacterized protein
STRINGMigut.D01451.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-134myb domain protein 4r1