PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028641
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 404aa    MW: 45077.4 Da    PI: 6.7475
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028641genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.79.8e-36451871128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 
                  lp+G++F+Ptd+elv e+L++kve+++      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          
  DCAR_028641  45 LPAGVKFDPTDQELV-EHLEAKVEDTElkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdlqSG 137
                  799************.99********95554442...143333666646**********.555666799******************75666665444 PP

          NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  DCAR_028641 138 ETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTSWVMHQYHL 187
                  778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3840206IPR003441NAC domain
PROSITE profilePS5100533.13645206IPR003441NAC domain
PfamPF023652.4E-1646187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MNKSSSSISS SDLIDAKLEE HQLYGSKHCP GCGHKLEGKK DWVGLPAGVK FDPTDQELVE  60
HLEAKVEDTE LKSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSKAYTT  120
GTRKRRKIQT ECDLQSGETR WHKTGKTRPV MVNGKQKGCK KILVLYTNFG KNRKPEKTSW  180
VMHQYHLGQN EEEREGELVV SKIFYQTQPR QCSWSDRTHV GSLVPTDDEN INPGNIGSSS  240
SKDLIANRDD LSAVGVGASI PTYNNPLDIH QLGPHDHYSF LPFGKSFSEV RTAGDNEASA  300
TAMETAATTA GTYEERMLHQ QMTHHHQQLA TAAFHISMPS HSISTILSPP PSLHHRTTTA  360
VMPSIDDSFH VSTIMPQNEN IIQVQSSIEL FDSFYTLIYN VHA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656241.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
RefseqXP_010656242.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
RefseqXP_010656243.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
RefseqXP_010656244.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
RefseqXP_010656245.10.0PREDICTED: NAC domain-containing protein 8 isoform X2
RefseqXP_010656246.10.0PREDICTED: NAC domain-containing protein 8 isoform X3
SwissprotQ9M0F81e-136NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A175YKP90.0A0A175YKP9_DAUCS; Uncharacterized protein
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-134NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]