PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028374
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 335aa    MW: 38638.4 Da    PI: 6.6616
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028374genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.97.1e-20235317286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  W k+ev+ Li++r  +++++ +g  k+ lWe v++++ + g++r++k+ kekwe++n+ y+k+ e ek+  s+ s++cpyf++l+
  DCAR_028374 235 WRKSEVQSLITVRAALDHKFLNG-HKGSLWELVAARLFRMGYNRTAKKWKEKWESINNNYRKTLECEKSC-SGYSKSCPYFQELD 317
                  *********************99.99******************************************96.89999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.214227290IPR017877Myb-like domain
PfamPF138375.9E-14234317No hitNo description
CDDcd122036.38E-16235296No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSSPVEHESC SNTTIFQPDS CLTPFPQAPY PLFSQPQKLR PIRRTSDDMT QQPCLVNEAR  60
CDTASFVSKA FQDYKAQSDA QLLDFISQAT SFDAQFSSSS DDDSESSEAV KESTNRKRKR  120
KRNSLELLME NIMRKVMYNQ ERMHRQLLDI LEKNEEARLI REEAWKQQEI ERAQRDEELR  180
REEVSRSLAL ISYVQDLLGH EIQIPKSCEV SCAEKNEQEF SNLGNCDTDP NNKGWRKSEV  240
QSLITVRAAL DHKFLNGHKG SLWELVAARL FRMGYNRTAK KWKEKWESIN NNYRKTLECE  300
KSCSGYSKSC PYFQELDILY KSGLITLVNA TGNI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114121NRKRKRKR
2115120RKRKRK
3115121RKRKRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220864.10.0PREDICTED: trihelix transcription factor GTL1
TrEMBLA0A175YNC60.0A0A175YNC6_DAUCS; Uncharacterized protein
STRINGXP_009771160.12e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128841620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-34Trihelix family protein