PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028315
Common NameDcMYB3-2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 287aa    MW: 32172.4 Da    PI: 8.1541
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028315genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed++l d ++++G g W+  +++ g++R++k+c++rw++yl
      DCAR_028315 14 KGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     79********************************************97 PP

2Myb_DNA-binding50.35.4e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
      DCAR_028315  67 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                      78999*****************.*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.899961IPR017930Myb domain
SuperFamilySSF466893.05E-2711108IPR009057Homeodomain-like
SMARTSM007179.5E-121363IPR001005SANT/Myb domain
PfamPF002493.5E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-211568IPR009057Homeodomain-like
CDDcd001674.69E-91661No hitNo description
PROSITE profilePS5129425.8162116IPR017930Myb domain
SMARTSM007176.9E-1666114IPR001005SANT/Myb domain
PfamPF002493.9E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2469115IPR009057Homeodomain-like
CDDcd001671.56E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRSPCCSKV GLNKGAWTTA EDKILTDFIH LHGEGGWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLRKKAHDNH  120
TTSAAASPKT PTKQCNNKKT KKHKKKREKS EPIKPEIKAN ASDVRAKAAL DEADHQLITS  180
TSTMEPLVQP ALQNKTTDQS SDLVPGVDSS DMCLTDFLNY DFSGLLNTDI NHQDYDMESA  240
SPCSSSEKPI MQILEEFWNA EEPCLVSNSN LYFTSLSECL VGDWLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2985070.0AB298507.1 Daucus carota DcMYB3-2 mRNA for transcription factor DcMYB3-2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220937.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A175YLY10.0A0A175YLY1_DAUCS; Uncharacterized protein
TrEMBLA4GZI30.0A4GZI3_DAUCA; Transcription factor DcMYB3-2
STRINGGLYMA13G16890.11e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-62myb domain protein 3