PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_028315 | ||||||||
Common Name | DcMYB3-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32172.4 Da PI: 8.1541 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed++l d ++++G g W+ +++ g++R++k+c++rw++yl DCAR_028315 14 KGAWTTAEDKILTDFIHLHGEGGWRNLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.4e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ DCAR_028315 67 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999*****************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.899 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.05E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.69E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.81 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRSPCCSKV GLNKGAWTTA EDKILTDFIH LHGEGGWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLRKKAHDNH 120 TTSAAASPKT PTKQCNNKKT KKHKKKREKS EPIKPEIKAN ASDVRAKAAL DEADHQLITS 180 TSTMEPLVQP ALQNKTTDQS SDLVPGVDSS DMCLTDFLNY DFSGLLNTDI NHQDYDMESA 240 SPCSSSEKPI MQILEEFWNA EEPCLVSNSN LYFTSLSECL VGDWLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB298507 | 0.0 | AB298507.1 Daucus carota DcMYB3-2 mRNA for transcription factor DcMYB3-2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017220937.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A175YLY1 | 0.0 | A0A175YLY1_DAUCS; Uncharacterized protein | ||||
TrEMBL | A4GZI3 | 0.0 | A4GZI3_DAUCA; Transcription factor DcMYB3-2 | ||||
STRING | GLYMA13G16890.1 | 1e-77 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-62 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_028315 |