PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_028314

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB

Protein Properties

Length: 265aa MW: 29953.8 Da PI: 6.6669

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_028314	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47	6e-15	15	61	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT+ Ed+ll d++ ++G g W+ ++t g++R++k+c++rw++yl DCAR_028314 15 GAWTAAEDKLLSDYILLHGEGGWRNLPKTAGLKRCGKSCRLRWLNYL 61 89*******************************************97 PP
2	Myb_DNA-binding	50.5	4.8e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ DCAR_028314 67 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999***************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.297	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.47E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	8.6E-9	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-12	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-21	15	68	IPR009057	Homeodomain-like
CDD	cd00167	7.66E-7	16	61	No hit	No description
PROSITE profile	PS51294	25.409	62	116	IPR017930	Myb domain
SMART	SM00717	6.9E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-14	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-24	69	115	IPR009057	Homeodomain-like
CDD	cd00167	2.95E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MGRRPCCSKV GMKTGAWTAA EDKLLSDYIL LHGEGGWRNL PKTAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLRKKTHGNH 120 TTLASSSKAH TKQCNKKKMN KKVDKVDLFP QNVESSNVCD HVKALNCSDQ FPGSADENSN 180 HVPIDLVPAD TDLGDISLTE LLDYDLSGSL GTESHIEYEM EHMPSWVFSH DKTDLEEFWS 240 VDEQNLYSNL NLYSADCVGD WLFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-24	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222148.1	0.0	PREDICTED: transcription factor MYB82-like
TrEMBL	A0A175YKN2	0.0	A0A175YKN2_DAUCS; Uncharacterized protein
STRING	XP_010666251.1	5e-71	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-60	myb domain protein 3

Link Out ? help Back to Top
Phytozome	DCAR_028314