PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028312
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 317aa    MW: 35335.8 Da    PI: 7.1928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028312genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT +Ed++l d+++++G g+W+  +++ g+ R++k+c++rw++yl
      DCAR_028312 14 RGVWTSDEDKILTDYIQLHGEGRWRNLPKRAGLMRCGKSCRLRWLNYL 61
                     899*******************************************97 PP
2Myb_DNA-binding49.21.3e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
      DCAR_028312  67 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      78999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.488961IPR017930Myb domain
SuperFamilySSF466898.24E-2811108IPR009057Homeodomain-like
SMARTSM007177.3E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-221668IPR009057Homeodomain-like
CDDcd001675.50E-101761No hitNo description
PROSITE profilePS5129425.21262116IPR017930Myb domain
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002496.7E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2469115IPR009057Homeodomain-like
CDDcd001675.56E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRSPCCSKV GLNRGVWTSD EDKILTDYIQ LHGEGRWRNL PKRAGLMRCG KSCRLRWLNY  60
LRPDIKRGNI SDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT SLRKKAHGNH  120
TASSSPPPKI STKQNNTKRK DKRKRDSAQV NVDAKLPHQT PSAQCTEILI SPKPDNLTTR  180
EPVPKILDAD EGKMCPDLAI PTGSNETVSV KTNEHVSEPK NISQLALDPD VNIGSSDDIS  240
FTKLLSPGFS GLFGSDFYNH EENETTSTSP SSSNEKSMME MLEEFWNVEN IIIEPNLGAS  300
DLHFGSAAEC LGDWLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138145RKDKRKRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221987.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A175YLX20.0A0A175YLX2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-62myb domain protein 5