PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028264
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 666aa    MW: 73907.6 Da    PI: 9.215
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028264genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.25.3e-1071127155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+ ++ a+ k++g
  DCAR_028264  71 SRFRGVSRHRWTGRYEAHLWDkGSWNVtQRkKGKQ-GAYDEEESAARSYDLAAIKYWG 127
                  789******************88887785635555.********************98 PP
2AP249.79e-16170221155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  DCAR_028264 170 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 221
                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-771127IPR001471AP2/ERF domain
CDDcd000184.27E-1671137No hitNo description
SuperFamilySSF541711.5E-1271137IPR016177DNA-binding domain
PROSITE profilePS5103217.46472135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1072136IPR001471AP2/ERF domain
SMARTSM003805.2E-1772141IPR001471AP2/ERF domain
PRINTSPR003677.1E-57384IPR001471AP2/ERF domain
PfamPF008472.5E-11170221IPR001471AP2/ERF domain
CDDcd000186.07E-24170231No hitNo description
SuperFamilySSF541712.94E-17170231IPR016177DNA-binding domain
PROSITE profilePS5103218.676171229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-18171230IPR001471AP2/ERF domain
SMARTSM003802.5E-25171235IPR001471AP2/ERF domain
PRINTSPR003677.1E-5211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MEMNLVKPEA GSGSRSLCNV ETDISMTKCV KRRRRSPSLA QGVEPQQSKP PGLPLADPPA  60
ATTTTTVKRS SRFRGVSRHR WTGRYEAHLW DKGSWNVTQR KKGKQGAYDE EESAARSYDL  120
AAIKYWGTSI LTNFPVSDYE KEIEIMGSLT KEEYLASLRR RSSGFSRGVS KYRGVARHHH  180
NGRWEARIGR VFGNKYLYLG TYSTQEEAAH AYDIAAIEYR GINAVTNFDL STYIRWLRTS  240
GANSLTCQDP RTSSDSQALT AASSSSSTLD PVKESEFSYN SNSFTFGMEI PPKQELFERI  300
MPVGPNKSSP TALSLLLRSS VFKELVEKNS NDEAPPQGKV IRNKYELHEH EFGGIVCDGV  360
VEDDNSLTPG TVSRATNSLS SPGSLNICVC VFLISFSEHG MMSVSPESRP ICLLPHHLDE  420
SPHSISHKNF NYDLGMMKEK GSSWRPCKST KTIPLSANMG YSQLNPFFQG SCMKENIYPC  480
TVLKSTASVP QSLAKDLTGI GGKHRLVDTG RQRQHSDDKF GHENNAQRSP MAPAMIVGSN  540
GSGRSWTEYL KSNYARMPLT ALRPLIKSVL KSSILQDDKI LISSEAEGVE FLAINLITVS  600
FSLDQIKEIE GKLGVPLSSS EYSRLSLLRR TVFYLERAAR MYSVLPYAVG QVLFELPYSS  660
IQTIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222220.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A175YKS80.0A0A175YKS8_DAUCS; Uncharacterized protein
STRINGVIT_01s0026g01690.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-73AP2 family protein