PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_028214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23548.3 Da PI: 9.5017 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.3 | 2.6e-20 | 17 | 59 | 4 | 46 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + +sn vtfskRr g++KKA+ELS+LC++e+a+i+fs+ k+ DCAR_028214 17 SKESNLRVTFSKRRCGLFKKASELSTLCGVEIAIIVFSPGKKV 59 6789999*******************************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.011 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.7E-25 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-24 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-15 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-22 | 16 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-15 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-15 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MATKSKGRQK IVMAKMSKES NLRVTFSKRR CGLFKKASEL STLCGVEIAI IVFSPGKKVF 60 SVGYPNVEQI LDKFLNAQDS SPMNSTTLQL GQALRSQRVR LLNKELSELL IYSEEQKKQG 120 EELIKLRKQR EEMFWWEALV DDLRFEQLDM LKTGMEDLKR SIATHAQNLV MMEHALALNG 180 CSTSTGLSMT SNGFNLGHEC GHPIVYQN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221398.1 | 1e-154 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-50 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A175YKX7 | 1e-153 | A0A175YKX7_DAUCS; Uncharacterized protein | ||||
STRING | XP_002522085.1 | 2e-59 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-52 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_028214 |
Publications ? help Back to Top | |||
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