PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028214
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23548.3 Da    PI: 9.5017
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028214genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.6e-201759446
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 + +sn  vtfskRr g++KKA+ELS+LC++e+a+i+fs+  k+
  DCAR_028214 17 SKESNLRVTFSKRRCGLFKKASELSTLCGVEIAIIVFSPGKKV 59
                 6789999*******************************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.011666IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-25665IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-24780IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-15828IPR002100Transcription factor, MADS-box
PfamPF003195.5E-221661IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-154364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MATKSKGRQK IVMAKMSKES NLRVTFSKRR CGLFKKASEL STLCGVEIAI IVFSPGKKVF  60
SVGYPNVEQI LDKFLNAQDS SPMNSTTLQL GQALRSQRVR LLNKELSELL IYSEEQKKQG  120
EELIKLRKQR EEMFWWEALV DDLRFEQLDM LKTGMEDLKR SIATHAQNLV MMEHALALNG  180
CSTSTGLSMT SNGFNLGHEC GHPIVYQN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221398.11e-154PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-50AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A175YKX71e-153A0A175YKX7_DAUCS; Uncharacterized protein
STRINGXP_002522085.12e-59(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-52AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]