PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028146
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 302aa    MW: 34213.9 Da    PI: 5.8065
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028146genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l d++++ G g+W+t ++  g+ R++k+c++rw +yl
      DCAR_028146 14 KGPWTPEEDQKLMDYIQKNGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.65.1e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE+e +++++  lG++ W+tIa++++ gRt++++k++w++
      DCAR_028146  67 RGKFSLEEEEAIIQLHSVLGNK-WSTIAARLP-GRTDNEIKNYWNT 110
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.298961IPR017930Myb domain
SuperFamilySSF466891.17E-3111108IPR009057Homeodomain-like
SMARTSM007178.4E-121363IPR001005SANT/Myb domain
PfamPF002498.2E-161461IPR001005SANT/Myb domain
CDDcd001673.16E-111661No hitNo description
PROSITE profilePS5129425.99162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2665116IPR009057Homeodomain-like
SMARTSM007173.1E-1566114IPR001005SANT/Myb domain
PfamPF002495.1E-1567110IPR001005SANT/Myb domain
CDDcd001677.71E-1269110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRSPCCDKN GLKKGPWTPE EDQKLMDYIQ KNGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLEEEEAIIQ LHSVLGNKWS TIAARLPGRT DNEIKNYWNT SIRKKLLRNG  120
IDPVTHNPRL DLLDLSTFFT SNLYNSPQFM NFLSASRSLG PNPNPLTTDN FLPSTYQNLD  180
NFVSTEDRIS NLDNASLQPS PAQELVQFSN ELIEPNADQF TSFSTTGLNE WQCSEMGSNV  240
NYGYYGSGQE NSGFGSNSSH NNMSYTSVMS TPQSASPLNL NSTEDEREMN MFNFQDVFIR  300
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221994.10.0PREDICTED: transcription factor MYB3-like
TrEMBLA0A175YNM90.0A0A175YNM9_DAUCS; Uncharacterized protein
STRINGXP_009374421.11e-106(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-95MYB-like 102