PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_028042

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 295aa MW: 33215.4 Da PI: 8.4752

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_028042	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.6	1e-31	47	187	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+P+d+ ++ e+L++kv +++ + + +++ +i++++P +Lp v+++ + +fF++ k+y+tg+rk+r+++ + DCAR_028042 47 LPAGVKFDPSDQVIL-EHLEAKVLHESqklhplI---DkfipTLEGEnGICNTHPDKLP-GVNKDGQIRHFFHRPLKAYTTGTRKRRKVHtdeeggET 139 799******8655.9**99995554332...132222333336******.666777788**************74445655577 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l DCAR_028042 140 RWHKTGKTRPVFV-DGVLKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 187 8********.9*********6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-35	43	206	IPR003441	NAC domain
PROSITE profile	PS51005	31.678	47	206	IPR003441	NAC domain
Pfam	PF02365	1.3E-13	48	187	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAWCSESPGR DEHALVTMGR NQTLTCPSCN HSIPLQDQVG VQHLPGLPAG VKFDPSDQVI 60 LEHLEAKVLH ESQKLHPLID KFIPTLEGEN GICNTHPDKL PGVNKDGQIR HFFHRPLKAY 120 TTGTRKRRKV HTDEEGGETR WHKTGKTRPV FVDGVLKGFK KILVLYTNYG RQKKPEKTNW 180 VMHQYHLGDN EEEKDGELVV SKVFYQTQPR QCPGSSVKAT DNESPSRLIR QDLDHDFSMK 240 NSGLIEFYNP SFISYNNNVG GQNREMVQPQ LIPNLTRNNL QIGANYKVGD AGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222094.1	0.0	PREDICTED: NAC domain-containing protein 73
Swissprot	O49459	1e-111	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A175YLF0	0.0	A0A175YLF0_DAUCS; Uncharacterized protein
STRING	XP_007160521.1	1e-135	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-114	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	DCAR_028042

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]