PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028033
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WOX
Protein Properties Length: 342aa    MW: 37367.3 Da    PI: 6.7956
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028033genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-083402457
                 S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +p ++e++++  +l    ++ +++V++WFqNr+ + k+
  DCAR_028033  3 NPPRDEIRRIRVQLqefgQVGDANVFYWFQNRKSRSKN 40
                 7999*******************************995 PP
2Wus_type_Homeobox65.97.9e-221422465
  Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++P+++ei+ri+ +L+e+G+++d+NVfyWFQNrk+R+++kq
        DCAR_028033  1 MVNPPRDEIRRIRVQLQEFGQVGDANVFYWFQNRKSRSKNKQ 42
                       78**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000463.8E-6339IPR001356Homeobox domain
SuperFamilySSF466892.51E-5343IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVNPPRDEIR RIRVQLQEFG QVGDANVFYW FQNRKSRSKN KQPRNNTKSH SHAPITTALT  60
MVPPPSSSSN KSSHKPSQKE KQNQTTVCTN KLAPFSVNIV TDTSLNSPTA SVNQNSFVPT  120
SGEFLTEPEP EPFFFPVLSG GNHASTFTQG FRSAEISTSV IHQQNLVVDD QTVKNHSNLL  180
LSDLLMNDGA TNYKKVVRDE KNNALPQQLL TSYGSSAPTT MASNSIYLPS NTLPSVADNV  240
QGKSTVVIND VRFEVPSGPL NVKEAFGDDA VLIHSSGQPV VTDTWGVTLQ PLQHGASYYL  300
CTCSETREWT AYADLHAEAX VELRGGRDDQ RGKDGVLMDV G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221500.10.0PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBLA0A175YLT40.0A0A175YLT4_DAUCS; Uncharacterized protein
STRINGEOY281177e-68(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-21homeobox-3