PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028029
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 288aa    MW: 32716.7 Da    PI: 4.9234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028029genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-20134184255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd    + k +r++lg+fgtaeeAa a+++a+ +++g
  DCAR_028029 134 HYRGVRRRP-WGKYAAEIRDsT--R-KGARVWLGTFGTAEEAALAYDKAAIRIRG 184
                  7********.**********32..2.24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-31133193IPR001471AP2/ERF domain
SMARTSM003801.8E-37134198IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-23134193IPR016177DNA-binding domain
PfamPF008476.3E-15134184IPR001471AP2/ERF domain
PROSITE profilePS5103223.314134192IPR001471AP2/ERF domain
CDDcd000182.21E-32134192No hitNo description
PRINTSPR003671.0E-10135146IPR001471AP2/ERF domain
PRINTSPR003671.0E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTVRKDATSS SPEAILENVW ANFFGRDHEY YSNELHKEFD VFQFWNEMPT LDHNTVQQTG  60
PFTTDMLERL PSLGRGMSMG SETSWETILS ECTAPSLHVE NSLSTLNHDF ESLERNERLR  120
KNVEIKVEKI NTRHYRGVRR RPWGKYAAEI RDSTRKGARV WLGTFGTAEE AALAYDKAAI  180
RIRGPKAHLN FPLEKKTQGS SNIAIPSESH VITSLFKSEQ LLDFDCTSFG CNHMLPELPN  240
EVYLATEEEH AIMKMAGLNE VCGDDQFDIL EFQDLGSDYL ESLLSTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-28133193161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222169.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A175YLT50.0A0A175YLT5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-27ERF family protein