PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_028018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 428aa MW: 49181.7 Da PI: 7.9319 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 187 | 233 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll + vk++G + W+ Ia ++ gR +kqc++rw+++l DCAR_028018 187 KGQWTAEEDRLLTHMVKKYGVRKWSHIATMLK-GRIGKQCRERWHNHL 233 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 241 | 281 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+++Ed +lv+a+++ G++ W+ Ia++++ gRt++++k++w+ DCAR_028018 241 LWSEDEDRILVEAHAKVGNK-WADIAKRLP-GRTENSIKNHWN 281 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.873 | 180 | 233 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-30 | 186 | 280 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-17 | 186 | 235 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-26 | 188 | 240 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.32E-15 | 190 | 233 | No hit | No description |
Pfam | PF13921 | 2.0E-16 | 190 | 247 | No hit | No description |
PROSITE profile | PS51294 | 27.375 | 234 | 288 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-17 | 238 | 286 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 241 | 287 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.16E-13 | 242 | 284 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MEFDPCYRED HVHQPVLLPN NYIKPEIDHN FSLDICSPKG FFQDNCQVLD QLSFSGSSFY 60 YSPNKICAPN GFCEPYDPFL LASAKNFDFY DQPKPFEENG SSSFLQNSSY LHVDGLFNTY 120 KTTPELLNAS NYPNSAKMPG VVPDEGSCVT TDNKILGTKK HFGKKYNDST LTSTKPSKLK 180 KKLKSSKGQW TAEEDRLLTH MVKKYGVRKW SHIATMLKGR IGKQCRERWH NHLRPDIKKD 240 LWSEDEDRIL VEAHAKVGNK WADIAKRLPG RTENSIKNHW NATKRRQYSR RKCRTKWPRP 300 SSILQNYIKS LNLDIAKPTN YRKKSTTATT PNLNIPAMKT QHLQETKEFC PSYSDGLKEL 360 CEFDFVENPF EGDSIDALLE DLPTIEAPLV LEDNYFDMDA NSHDQVPSLM QVKKDLDLME 420 MISEINI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-44 | 187 | 287 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-44 | 187 | 287 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 184 | LKKKLKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221504.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 2e-73 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A175YMU0 | 0.0 | A0A175YMU0_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-72 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_028018 |
Publications ? help Back to Top | |||
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