PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_028008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25079.9 Da PI: 9.1028 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.3e-12 | 40 | 86 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riN +++Lr l+P +K++Ka+ L +++ +k+L DCAR_028008 40 KSHSEAEKRRRERINAHLDTLRGLVPCT-----GKMDKASLLAEVISQVKQL 86 58*************************9.....9************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.694 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-10 | 40 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-9 | 40 | 87 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-13 | 41 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-12 | 41 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-11 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.66E-5 | 117 | 202 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.4E-5 | 120 | 174 | No hit | No description |
CDD | cd04873 | 6.87E-4 | 124 | 193 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MLNGENLLDD GEKVETLKAM EVLDEKKDGD IEVKSVAALK SHSEAEKRRR ERINAHLDTL 60 RGLVPCTGKM DKASLLAEVI SQVKQLKVSA AEASKGLLIA TDADEVKVEP LKRSSACGTY 120 YLASVCCDYK REVLSDMKQA LESLNLNIVK AEISTFKKRM KYVFVFTSSK DNGNAKEHLF 180 LMNTVRQALS SILEKISLSM EYTPRTTPPN KRRKISLYES SSLSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017219991.1 | 1e-163 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A175YMU9 | 1e-162 | A0A175YMU9_DAUCS; Uncharacterized protein | ||||
STRING | VIT_14s0068g01580.t01 | 8e-74 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6730 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_028008 |