PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027865
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 786aa    MW: 86187.4 Da    PI: 6.3668
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027865genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.86.9e-171064353
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRa 53
                 k  ++t+eq+e+Le++++++++ps ++r++L + +    +++ +q+kvWFqNrRa
  DCAR_027865 10 KYVRYTAEQVEALERVYAECPKPSSSRRQQLIRDIpilsNIEPKQIKVWFQNRRA 64
                 5679**************************************************8 PP

2START147.81e-461083142203
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka  ++ +Wv+ + +++g++++ +++ s++++g a+ra+g+v  ++   v+e+l+d+  W ++++  ++  v  +g  g+l+l +++
  DCAR_027865 108 IAEETLAEFLRKAIGTAVNWVQIVGMKPGPDSIGSVAISRNCRGIAARACGLVGLEPR-KVAEILKDRISWFHDCRCLDVSSVFPTGngGTLELLYMQ 204
                  68999*****************************************************.8888888888*******9999999999999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p    ++ +vRa +lpSg+li+p+++g+s + +v+h+dl+  +++++lr+l++s+++ 
  DCAR_027865 205 TYAPTTLASaRDFWTLRYTTTLEDGSLVVCERSLTSSTGGPMrppTACFVRADMLPSGYLIRPCDGGGSIINIVDHMDLNPLTVPEVLRPLYESSTIL 302
                  **************************************99988889**************************************************** PP

                  HHHHHHHHTXXX CS
        START 192 gaktwvatlqrq 203
                  ++k+++a l++ 
  DCAR_027865 303 AQKMTMASLRHI 314
                  *******99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.268569IPR001356Homeobox domain
SMARTSM003893.0E-12773IPR001356Homeobox domain
CDDcd000862.78E-141064No hitNo description
PfamPF000461.7E-141064IPR001356Homeobox domain
SuperFamilySSF466893.51E-131065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-161264IPR009057Homeodomain-like
PROSITE profilePS5084824.06498312IPR002913START domain
CDDcd088751.34E-66104318No hitNo description
Gene3DG3DSA:3.30.530.204.0E-20106313IPR023393START-like domain
SMARTSM002341.0E-34107317IPR002913START domain
SuperFamilySSF559616.73E-34108319No hitNo description
PfamPF018521.8E-44108315IPR002913START domain
PfamPF086705.9E-47640784IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MGESQMDCSK YVRYTAEQVE ALERVYAECP KPSSSRRQQL IRDIPILSNI EPKQIKVWFQ  60
NRRAALASPT TTDTGCGSMV AISQQQQQTS TSQHPHRDAN SPTGLLAIAE ETLAEFLRKA  120
IGTAVNWVQI VGMKPGPDSI GSVAISRNCR GIAARACGLV GLEPRKVAEI LKDRISWFHD  180
CRCLDVSSVF PTGNGGTLEL LYMQTYAPTT LASARDFWTL RYTTTLEDGS LVVCERSLTS  240
STGGPMRPPT ACFVRADMLP SGYLIRPCDG GGSIINIVDH MDLNPLTVPE VLRPLYESST  300
ILAQKMTMAS LRHIRQIAQE TSGEIKYTGG HRPAVLRAFR QRLCRGFNDA INGFVDDGWS  360
TMNSDGLEDV TVAINMSAGK FLSSQYNAFS MLPTFGGVLC AKASMLIQDV PPPLLVRFLR  420
EHRSEWADSM IDAYNAASLK ASPYAVPCAR PGAPPSTQVI LPLAHSMENE ELLEVVRLEN  480
RAPEDLTLTS NMYLLQLCSG IDEKTAGGCA QLVFAPIDES FADDAPLLPS GFRVIPLDPE  540
SDKSSANRTL DLASALEVRH GGAHPHGEDN AGNYNLRSVL TIAFQFPFEN HFRDNVASMA  600
RQYVRSVVGS VQRVAMAISP SRANFNLEPK QLPGSPEAFT LARWISRSYR VHTGAELLKT  660
ESQVGNAVLE HLWNHSDAIL CCSVKTNISP VFSFANQAGL DMLETTLVAL QDIMLHKILD  720
DAGQKVLLSE FSKIMQQGFA YLPAGVCFSS MGRSISYDQA IVWKVLKDDN SDHCLAFMFL  780
NWSFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223336.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A175YMM80.0A0A175YMM8_DAUCS; Uncharacterized protein
STRINGXP_009777911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]