PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 786aa MW: 86187.4 Da PI: 6.3668 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.8 | 6.9e-17 | 10 | 64 | 3 | 53 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRa 53 k ++t+eq+e+Le++++++++ps ++r++L + + +++ +q+kvWFqNrRa DCAR_027865 10 KYVRYTAEQVEALERVYAECPKPSSSRRQQLIRDIpilsNIEPKQIKVWFQNRRA 64 5679**************************************************8 PP | |||||||
2 | START | 147.8 | 1e-46 | 108 | 314 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee+++e+++ka ++ +Wv+ + +++g++++ +++ s++++g a+ra+g+v ++ v+e+l+d+ W ++++ ++ v +g g+l+l +++ DCAR_027865 108 IAEETLAEFLRKAIGTAVNWVQIVGMKPGPDSIGSVAISRNCRGIAARACGLVGLEPR-KVAEILKDRISWFHDCRCLDVSSVFPTGngGTLELLYMQ 204 68999*****************************************************.8888888888*******9999999999999********* PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 ++a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p ++ +vRa +lpSg+li+p+++g+s + +v+h+dl+ +++++lr+l++s+++ DCAR_027865 205 TYAPTTLASaRDFWTLRYTTTLEDGSLVVCERSLTSSTGGPMrppTACFVRADMLPSGYLIRPCDGGGSIINIVDHMDLNPLTVPEVLRPLYESSTIL 302 **************************************99988889**************************************************** PP HHHHHHHHTXXX CS START 192 gaktwvatlqrq 203 ++k+++a l++ DCAR_027865 303 AQKMTMASLRHI 314 *******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.268 | 5 | 69 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-12 | 7 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.78E-14 | 10 | 64 | No hit | No description |
Pfam | PF00046 | 1.7E-14 | 10 | 64 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-13 | 10 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-16 | 12 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 24.064 | 98 | 312 | IPR002913 | START domain |
CDD | cd08875 | 1.34E-66 | 104 | 318 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.0E-20 | 106 | 313 | IPR023393 | START-like domain |
SMART | SM00234 | 1.0E-34 | 107 | 317 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.73E-34 | 108 | 319 | No hit | No description |
Pfam | PF01852 | 1.8E-44 | 108 | 315 | IPR002913 | START domain |
Pfam | PF08670 | 5.9E-47 | 640 | 784 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 786 aa Download sequence Send to blast |
MGESQMDCSK YVRYTAEQVE ALERVYAECP KPSSSRRQQL IRDIPILSNI EPKQIKVWFQ 60 NRRAALASPT TTDTGCGSMV AISQQQQQTS TSQHPHRDAN SPTGLLAIAE ETLAEFLRKA 120 IGTAVNWVQI VGMKPGPDSI GSVAISRNCR GIAARACGLV GLEPRKVAEI LKDRISWFHD 180 CRCLDVSSVF PTGNGGTLEL LYMQTYAPTT LASARDFWTL RYTTTLEDGS LVVCERSLTS 240 STGGPMRPPT ACFVRADMLP SGYLIRPCDG GGSIINIVDH MDLNPLTVPE VLRPLYESST 300 ILAQKMTMAS LRHIRQIAQE TSGEIKYTGG HRPAVLRAFR QRLCRGFNDA INGFVDDGWS 360 TMNSDGLEDV TVAINMSAGK FLSSQYNAFS MLPTFGGVLC AKASMLIQDV PPPLLVRFLR 420 EHRSEWADSM IDAYNAASLK ASPYAVPCAR PGAPPSTQVI LPLAHSMENE ELLEVVRLEN 480 RAPEDLTLTS NMYLLQLCSG IDEKTAGGCA QLVFAPIDES FADDAPLLPS GFRVIPLDPE 540 SDKSSANRTL DLASALEVRH GGAHPHGEDN AGNYNLRSVL TIAFQFPFEN HFRDNVASMA 600 RQYVRSVVGS VQRVAMAISP SRANFNLEPK QLPGSPEAFT LARWISRSYR VHTGAELLKT 660 ESQVGNAVLE HLWNHSDAIL CCSVKTNISP VFSFANQAGL DMLETTLVAL QDIMLHKILD 720 DAGQKVLLSE FSKIMQQGFA YLPAGVCFSS MGRSISYDQA IVWKVLKDDN SDHCLAFMFL 780 NWSFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017223336.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A175YMM8 | 0.0 | A0A175YMM8_DAUCS; Uncharacterized protein | ||||
STRING | XP_009777911.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027865 |