PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_027820

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 518aa MW: 58111.5 Da PI: 5.3618

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_027820	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	416.4	2.5e-127	147	517	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +++Ll+cAe+vs+gd +++ l++ l+ +s +g+pmqRl ay++e+++arl++s+s lyk+l++s+++ +sse ++++ + +++ P++kf+++ N DCAR_027820 147 KQVLLACAEVVSNGDISNVAPLMNILERKVSVTGEPMQRLGAYMMEGIKARLMSSGSILYKKLKCSDEP--TSSELMSYMGVIYQIVPFYKFAYMSSN 242 689*************************************************************999..59999999999************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 I ea+++e+r+HiiDf+i qG QW++L+qaLasRp+gpps+RiTgv+++++ + l+ +g+rL+k+Ae++gvpfef+ +a + ++++le+Lr DCAR_027820 243 AIIEEAMKSESRIHIIDFQIVQGSQWVPLIQALASRPGGPPSVRITGVDDSNAAyaRGGGLQLVGDRLSKVAESCGVPFEFHG-AALSGSEVKLENLR 339 **********************************************888899999********************.899******* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 v++gEalaVn+ + lh+++desvs+e++rd++L+l+kslsPkvv++veqe+++n+++Fl rf e+leyy a+f++++++ +r++++ri+ E+++++r+ DCAR_027820 340 VRQGEALAVNFPYVLHHMPDESVSTENHRDRLLRLIKSLSPKVVTLVEQESNTNTSPFLPRFRETLEYYEAMFEAIDTTRARDDRQRISAEEHCVARD 437 ********************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ivn++acegaer+erhe ++kWr rl++aG+++ +ls+++ +k +l++++++ +r+e+++g+l+l Wk+r Lv++SaWr DCAR_027820 438 IVNMIACEGAERVERHELFGKWRLRLSMAGYTQCQLSYDVDGVVKDMLKEYDGN-FRLEHRNGALYLRWKNRDLVTCSAWR 517 ************************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.932	120	498	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.7E-125	147	517	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MQQVEPYRAS QFQIFNNSVS SDNSSQETPV SFHYDEQFFT LDSFPADYVG YDSPSAASTC 60 SRSPLSVQHS QSNWSEQHQS PDYTYGSPLS GSPMIHDGNK LTFFHKELES KSLGPQSETD 120 DVCSYTFNSV NPEVTSMLQM ISTLDVKQVL LACAEVVSNG DISNVAPLMN ILERKVSVTG 180 EPMQRLGAYM MEGIKARLMS SGSILYKKLK CSDEPTSSEL MSYMGVIYQI VPFYKFAYMS 240 SNAIIEEAMK SESRIHIIDF QIVQGSQWVP LIQALASRPG GPPSVRITGV DDSNAAYARG 300 GGLQLVGDRL SKVAESCGVP FEFHGAALSG SEVKLENLRV RQGEALAVNF PYVLHHMPDE 360 SVSTENHRDR LLRLIKSLSP KVVTLVEQES NTNTSPFLPR FRETLEYYEA MFEAIDTTRA 420 RDDRQRISAE EHCVARDIVN MIACEGAERV ERHELFGKWR LRLSMAGYTQ CQLSYDVDGV 480 VKDMLKEYDG NFRLEHRNGA LYLRWKNRDL VTCSAWR*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MQQVEPYRAS QFQIFNNSVS SDNSSQETPV SFHYDEQFFT LDSFPADYVG YDSPSAASTC  60
SRSPLSVQHS QSNWSEQHQS PDYTYGSPLS GSPMIHDGNK LTFFHKELES KSLGPQSETD  120
DVCSYTFNSV NPEVTSMLQM ISTLDVKQVL LACAEVVSNG DISNVAPLMN ILERKVSVTG  180
EPMQRLGAYM MEGIKARLMS SGSILYKKLK CSDEPTSSEL MSYMGVIYQI VPFYKFAYMS  240
SNAIIEEAMK SESRIHIIDF QIVQGSQWVP LIQALASRPG GPPSVRITGV DDSNAAYARG  300
GGLQLVGDRL SKVAESCGVP FEFHGAALSG SEVKLENLRV RQGEALAVNF PYVLHHMPDE  360
SVSTENHRDR LLRLIKSLSP KVVTLVEQES NTNTSPFLPR FRETLEYYEA MFEAIDTTRA  420
RDDRQRISAE EHCVARDIVN MIACEGAERV ERHELFGKWR LRLSMAGYTQ CQLSYDVDGV  480
VKDMLKEYDG NFRLEHRNGA LYLRWKNRDL VTCSAWR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-57	153	516	26	378	Protein SCARECROW
5b3h_A	6e-57	153	516	25	377	Protein SCARECROW
5b3h_D	6e-57	153	516	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269\|PubMed:16680434}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269\|PubMed:16680434}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017223372.1	0.0	PREDICTED: scarecrow-like protein 13
Refseq	XP_017223373.1	0.0	PREDICTED: scarecrow-like protein 13
Swissprot	Q9M0M5	0.0	SCL13_ARATH; Scarecrow-like protein 13
TrEMBL	A0A175YNR9	0.0	A0A175YNR9_DAUCS; Uncharacterized protein
STRING	PGSC0003DMT400034763	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA681	24	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17230.1	0.0	SCARECROW-like 13

Link Out ? help Back to Top
Phytozome	DCAR_027820