PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_027750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 30572.8 Da PI: 5.1905 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 128 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + + r +lg+f+t+ eAaka+++a+ +l+g DCAR_027750 128 HYRGVRKRP-WGKYAAEIRDP---NrRGSRLWLGTFDTPVEAAKAYDRAAYNLRG 178 8********.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 127 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-29 | 127 | 186 | No hit | No description |
PROSITE profile | PS51032 | 23.894 | 128 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 128 | 188 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.6E-35 | 128 | 192 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-13 | 128 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 168 | 188 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MATETEVSAL EIIRQHLLEE FSPVDTFINH FSQFDSVFIA DNSFSPSDSS SSSASSCTEI 60 AISDYFMPDE IDAFSFSQDL FISDQNQHIQ QQLNIELPEP DKNFELTESK STQPQHTKSS 120 TKEEDKKHYR GVRKRPWGKY AAEIRDPNRR GSRLWLGTFD TPVEAAKAYD RAAYNLRGSK 180 AILNFPLEIG KSNDEAGATN RGHKRTKQVT NIEDNTASTK KPKASTQNIS SNNVTDCLPP 240 VFTPSSSSEI MNLSDFPPLS PLASLGSYHQ LLAL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-29 | 127 | 189 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017220936.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
TrEMBL | A0A175YNZ2 | 0.0 | A0A175YNZ2_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-46 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_027750 |