PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027634
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Dof
Protein Properties Length: 308aa    MW: 33605.6 Da    PI: 8.6403
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027634genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.46.6e-3870129362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  e+a kcprC stntkfCyynnyslsqPr+fCkaCrryWt+GGalrnvPvGgg r+nkks+
  DCAR_027634  70 ETAYKCPRCASTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRRNKKSK 129
                  6789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2754122IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3271127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.87373127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVFSSVPAFQ VLDPLNWQYQ PPGGSVSDNN NDDSNHNHLT LPPMPPSHGL PIGPNSMAER  60
PKLTKLPPQE TAYKCPRCAS TNTKFCYYNN YSLSQPRHFC KACRRYWTRG GALRNVPVGG  120
GFRRNKKSKR IRSKSPITCN SSASGVSSGS CTTNNILGHS APSILPQFPL LPSMKFTEIL  180
GAEDINSLIF RGIQSPAAAS GEYSDQWRLQ KSAVAPGVLE PLSTGVTYQF RGEGLGEATT  240
SQHDFKTADY SSGPSQAELI KFGEDQGFMS LPKNVLDFPG NEQQEYWSSV YAWNEPNGLN  300
PSTGHLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221069.10.0PREDICTED: dof zinc finger protein DOF3.6-like isoform X2
SwissprotQ9M2U16e-43DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A175YMJ00.0A0A175YMJ0_DAUCS; Uncharacterized protein
STRINGVIT_13s0019g01410.t014e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-37OBF-binding protein 3