PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027563
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 353aa    MW: 38539.4 Da    PI: 7.3413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027563genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-172469147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W+ eEd  l d+v+++G+++W+  a+ ++ gR++k+c++rw + 
      DCAR_027563 24 RGSWSNEEDAALTDLVTKFGPRNWSVLAQGVP-GRSGKSCRLRWCNQ 69
                     89******************************.***********985 PP
2Myb_DNA-binding49.88e-16100137645
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +eEd+l++ a+k++G++ W+ Ia+ ++ gRt++ +k++w+
      DCAR_027563 100 EEEDQLIISAHKRHGSK-WSVIAKLLP-GRTDNAVKNHWN 137
                      7****************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.131974IPR017930Myb domain
SMARTSM007171.7E-132372IPR001005SANT/Myb domain
SuperFamilySSF466896.79E-272474IPR009057Homeodomain-like
PfamPF002493.2E-152469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-202580IPR009057Homeodomain-like
CDDcd001675.10E-132668No hitNo description
PROSITE profilePS5129417.04592144IPR017930Myb domain
SMARTSM007171.3E-994142IPR001005SANT/Myb domain
CDDcd001677.45E-12100140No hitNo description
Gene3DG3DSA:1.10.10.604.5E-18100141IPR009057Homeodomain-like
PfamPF002494.0E-14100137IPR001005SANT/Myb domain
SuperFamilySSF466896.79E-27112141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MIPYGGEAAV VADEDRAGEM RSVRGSWSNE EDAALTDLVT KFGPRNWSVL AQGVPGRSGK  60
SCRLRWCNQL DPGLKRIPFT GTPVGTWKMR YMQGHHFPAE EEDQLIISAH KRHGSKWSVI  120
AKLLPGRTDN AVKNHWNATL KRRCLGLSKP GPASHNTLVD GLLETSRASS QASYGHPNFI  180
KPPEVRKASM TPSGLVDFEN VHDTVIPEME EHHHVPEKEK DECRHNPEKD NPNSDSTLYR  240
PVANVGAFAV YNTLGSMITK TTPGQRSLLQ ASRPEFGISK VLNYSCGDPV VPRLCGYGCC  300
ASHGEANCQS SLLGPEFVDY QEIPSSTNQE LAALVTDLNN IAWIKSGVGT TA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-34231433104C-Myb DNA-Binding Domain
1msf_C5e-34231433104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222112.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A175YN360.0A0A175YN36_DAUCS; Uncharacterized protein
STRINGXP_006486452.12e-91(Citrus sinensis)
STRINGXP_006435568.13e-91(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-79myb domain protein 109