PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB_related | ||||||||
Protein Properties | Length: 277aa MW: 31796.8 Da PI: 8.2511 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.5 | 3.2e-13 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + ++t q+ s+ qky DCAR_027556 122 PWTEEEHRQFLMGLRKHGKGDWRNISRNFVITKTSTQVASHAQKY 166 8*****************************889***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.517 | 17 | 71 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.7E-5 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.58E-9 | 23 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00497 | 24 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-11 | 113 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.792 | 115 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-15 | 117 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-16 | 118 | 170 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-11 | 119 | 169 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-9 | 122 | 166 | No hit | No description |
Pfam | PF00249 | 1.0E-11 | 122 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
METLNPSSHT FTSSWLKQGF QRAKWTTEDN KMFESCLAFI DTETPDRWLM VASMIPGKSV 60 LDVIEQYKKL EDDISDIEAG LFLIEENLQN DSSTAKNLEL NEFGKRPLAC RSSDHEKKKG 120 VPWTEEEHRQ FLMGLRKHGK GDWRNISRNF VITKTSTQVA SHAQKYYLRQ LSEGKEKKRP 180 SIHDITTVHL TNATQSEKHK LSADNKSTVV PQPEKSISMP RYTLDRNNTD YGSSMMFNSM 240 HTNAFMPFKY EYGGHGADIN PLNSGFQFQA PRHQIW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017222833.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_017222834.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 3e-65 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A175YQC9 | 0.0 | A0A175YQC9_DAUCS; Uncharacterized protein | ||||
STRING | VIT_13s0019g03370.t01 | 4e-99 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-79 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027556 |
Publications ? help Back to Top | |||
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