PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027541
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 320aa    MW: 34827.3 Da    PI: 4.3758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027541genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.51.2e-2179128255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  gy+GVr++  +g+WvAeIr+p   +++kr++lg++ taeeAa+a+++a+++++g
  DCAR_027541  79 GYRGVRQRT-WGKWVAEIREP---NRNKRIWLGTYETAEEAAEAYDRAALAMYG 128
                  8*****999.**********8...335************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-2179134IPR016177DNA-binding domain
SMARTSM003801.6E-3179141IPR001471AP2/ERF domain
PfamPF008471.2E-1579128IPR001471AP2/ERF domain
PROSITE profilePS5103222.32679137IPR001471AP2/ERF domain
CDDcd000185.89E-1980134No hitNo description
Gene3DG3DSA:3.30.730.103.8E-2980134IPR001471AP2/ERF domain
PRINTSPR003677.0E-118091IPR001471AP2/ERF domain
PRINTSPR003677.0E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAYSGEGSSS HIHYHSIVQE NKSGFKRTDV AETIAKWRAS NDELNALYGA GIRGPRVPGI  60
GSKKGCMKGK GGPHNGCVGY RGVRQRTWGK WVAEIREPNR NKRIWLGTYE TAEEAAEAYD  120
RAALAMYGTS ARINNVEGYN LLNQSSIGLP SIASMYAASQ DGRSDFGGSY DGYGGWDDLV  180
IVDSSVPFLT AEGMAIEAPK EFAVSNKDGN GEEEPEQELS LSDIEDILNI LYSSTDTDGS  240
GPKPFVENQG SEVCHMEPNV ENVVYPAAIS EQLINNNADA TGLLHGNSEF DFLKPGRQED  300
LNYSLDEMGM LEFYYNMEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1880134358ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221634.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A175YNU80.0A0A175YNU8_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-20ERF family protein