PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027421
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 347aa    MW: 38976.3 Da    PI: 7.7106
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027421genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-1690135147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia +++ gR++k+c++rw++ 
      DCAR_027421  90 RGHWRPAEDAKLRELVALYGPQNWNLIADKLQ-GRSGKSCRLRWFNQ 135
                      899*****************************.***********996 PP
2Myb_DNA-binding55.21.7e-17142185146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
      DCAR_027421 142 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 185
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.07585136IPR017930Myb domain
SMARTSM007174.0E-1489138IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-2890183IPR009057Homeodomain-like
PfamPF002493.4E-1690135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2691143IPR009057Homeodomain-like
CDDcd001672.54E-1393134No hitNo description
PROSITE profilePS5129426.846137191IPR017930Myb domain
SMARTSM007174.4E-14141189IPR001005SANT/Myb domain
PfamPF002494.5E-14142184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20144190IPR009057Homeodomain-like
CDDcd001671.52E-11144184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSMIFADMGA LSISNSKASH VAENNVGANA MDHFPYFTSG HSHDSSSTSD GFRFGFGGEN  60
THETSFDLNN SSGKSLDQTD SCGQSKLCAR GHWRPAEDAK LRELVALYGP QNWNLIADKL  120
QGRSGKSCRL RWFNQLDPRI NRRAFSEEEE ERLMAAHRLY GNKWAMIARL FPGRTDNAVK  180
NHWHVIMARK YREQSSAYRR RKMAQTSNYH TIEDQETSFL MCKPEPVTHY KAATISNTFV  240
PPHYTGPSSY IYPFHQMQQN HYAPLMSENI AMQQSYLQFY PNGSGCSFTS DFKAEPPAHP  300
QVSSLTQQLT TSSSAATQEE DRNRIGKESD IINAPSFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-33901907107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222090.10.0PREDICTED: transcription factor MYB80
SwissprotQ9SEZ42e-77MY105_ARATH; Transcription factor MYB105
TrEMBLA0A175YP680.0A0A175YP68_DAUCS; Uncharacterized protein
STRINGevm.model.supercontig_1.433e-89(Carica papaya)
STRINGXP_010258320.12e-88(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-78myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]