PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027411
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 369aa    MW: 41600 Da    PI: 7.4946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027411genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-52171451128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                  + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+  +
  DCAR_027411  17 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKFDPWDLPKMASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSegT 113
                  579***************************.89***************9889999***************************************9666 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ +glkk+Lvfykgra kg ktdW+mhe+rl
  DCAR_027411 114 SKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 145
                  667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5716177IPR003441NAC domain
PROSITE profilePS5100556.57817177IPR003441NAC domain
PfamPF023651.3E-2519145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDHERSHDDG DKLDEVMLPG FRFHPTDEEL VGFYLKRKIQ QRPLSIELIK QLDIYKFDPW  60
DLPKMASTGE KEWYFYCPRD RKYRNSARPN RVTGAGFWKA TGTDRPIYSS EGTSKCIGLK  120
KSLVFYKGRA AKGIKTDWMM HEFRLPSLGD SVPPKRYIDK NSIPANDAWA ICRIFKKANS  180
NAQRALSNSW VSPDLRPAHT TTLTSQNLLP HYQTSTTTTP TCNNNLHHSS SITNPTPNFD  240
LSLYKAYNQM ASGGGYAFFG QETCNIDTSS LLFNMSSTMF GDFEKVPECV DYKGIEEQYA  300
STCFPPSLQQ VEQNVGHGGE NLMALLKESC PSVIPLDDEL GVNIRASMGL PYIFPLSMSE  360
TWRSSFGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-551118410171NO APICAL MERISTEM PROTEIN
1ut4_B6e-551118410171NO APICAL MERISTEM PROTEIN
1ut7_A6e-551118410171NO APICAL MERISTEM PROTEIN
1ut7_B6e-551118410171NO APICAL MERISTEM PROTEIN
4dul_A6e-551118410171NAC domain-containing protein 19
4dul_B6e-551118410171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222468.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-100FEZ_ARATH; Protein FEZ
TrEMBLA0A175YP780.0A0A175YP78_DAUCS; Uncharacterized protein
STRINGVIT_01s0026g02360.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-100NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]