PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NF-YB | ||||||||
Protein Properties | Length: 117aa MW: 12973.5 Da PI: 4.7713 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 147.6 | 2.7e-46 | 18 | 111 | 3 | 96 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 eqd +lPianv+rimk+ lPanak+sk++ket+qecvsefi fvt+eas++c+rekrk ++gdd++ a+ tlGf++y+ ++k yl+kyr+ eg DCAR_027083 18 EQDLLLPIANVGRIMKQNLPANAKVSKESKETMQECVSEFICFVTEEASERCRREKRKILSGDDICGAMQTLGFDNYAGTMKRYLEKYRQSEGG 111 89****************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.1E-46 | 11 | 114 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-34 | 19 | 113 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.3E-24 | 23 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.4E-14 | 50 | 68 | No hit | No description |
PRINTS | PR00615 | 4.4E-14 | 69 | 87 | No hit | No description |
PRINTS | PR00615 | 4.4E-14 | 88 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MADNSGDSAS NNDQSVPEQD LLLPIANVGR IMKQNLPANA KVSKESKETM QECVSEFICF 60 VTEEASERCR REKRKILSGD DICGAMQTLG FDNYAGTMKR YLEKYRQSEG GRANQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-38 | 18 | 107 | 3 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-38 | 18 | 107 | 3 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221717.1 | 3e-82 | PREDICTED: nuclear transcription factor Y subunit B-5-like | ||||
Swissprot | O82248 | 1e-46 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A175YPG0 | 7e-81 | A0A175YPG0_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_018746m | 4e-54 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 4e-49 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027083 |
Publications ? help Back to Top | |||
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