PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GATA | ||||||||
Protein Properties | Length: 141aa MW: 15335.7 Da PI: 9.4923 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.4 | 9.9e-19 | 26 | 60 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rk+++ DCAR_027021 26 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 60 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.558 | 20 | 56 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.2E-14 | 20 | 70 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-12 | 21 | 60 | No hit | No description |
CDD | cd00202 | 3.32E-13 | 25 | 60 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.9E-15 | 25 | 59 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.8E-16 | 26 | 60 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 26 | 51 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MVDLSDKGSD SEEMMINEAS NQLKTCVDCG TSKTPLWRGG PAGPKSLCNA CGIRSRKRRR 60 ALLGLNKDDK KPKKNAADEA INSNNDDTMV DCLKRKLMAL GSEVVIQRPR SSISKQRRKM 120 SEEEQAAMLL MALSCGSVFA * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 59 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017220778.1 | 8e-98 | PREDICTED: GATA transcription factor 15-like isoform X1 | ||||
Refseq | XP_017220779.1 | 8e-98 | PREDICTED: GATA transcription factor 15-like isoform X2 | ||||
Swissprot | Q8LG10 | 3e-38 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A175YQD3 | 2e-96 | A0A175YQD3_DAUCS; Uncharacterized protein | ||||
STRING | XP_009590421.1 | 2e-52 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 3e-37 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027021 |
Publications ? help Back to Top | |||
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