PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_027004

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GRAS

Protein Properties

Length: 493aa MW: 55673.3 Da PI: 6.2373

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_027004	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	262.4	1.5e-80	119	488	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsPilkfshl 96 Ll+ Ae + ++++++ +lL+ +la+pdg+p++Rl++yf+eAL++r+++ +++ l + ++ ++++ +++l++l+ ++ P+ ++ ++ DCAR_027004 119 FLLASAETFVNRQFHQMINLLSMCYQLATPDGNPIKRLVFYFAEALKERIQQeTGNALLGGMGHQRRKTMQLQDALTMLHPaaiaCHQQLPVSQVIQF 216 688999999999999999********************************7788888888888887788777766665455679999***** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 + qaIl+ v++++r+H +D++i++Gl W+ ++qaL+ R e p l+iT+v s +s+e++e +g+rL++fA+++++pf+fn+ v++++edl e DCAR_027004 217 ASMQAILDNVSTSSRIHLVDIGIKNGLYWVIFMQALSVRHECPLeLLKITAVIS---SSRESTEVIGKRLSSFAQSINLPFSFNI-VVTSMEDLMEEV 310 ***********************************96655499*99...589999*****************9.7999**** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 ++++++E++a +++ l ++l+ + l+ ++ ++k+++P+v+vvve ea +ns+ +++rf+eal y +lfd+le+ + r s+ r+++E+++l DCAR_027004 311 FSFETEETVAFFSHVYLSTMLAWPNRLAA----LMGVMKKIRPRVMVVVEIEAHTNSPALMDRFIEALFLYGSLFDCLENCMDRCSQFRKTIEAVYLW 404 ****************965555555....************************************************************* PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + i+n+v+ eg+ ++rhe+ Wr+ ++++G+ +++ls++ +qa+l+l+k + ++ ++ + +sl+ gWk+ p+ svSaW+ DCAR_027004 405 EGIQNLVTSEGELWIHRHEKIDYWRDVFGRFGLVEMELSKSSLSQADLVLKKNPcGKFCTLAMNGKSLICGWKGAPISSVSAWE 488 **************************************************88889999*******************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.886	90	467	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.2E-78	119	488	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MNSIYARTLE QCEEATGESD NVKARTKSLP LASIELLKKC GSKRNHFGFE ENVELNLHVP 60 GNTGNRVLSV EDVMMIAKEK YIQYISHTPD DLSMLFHPLN NHYSGLSGEA AEDIELVVFL 120 LASAETFVNR QFHQMINLLS MCYQLATPDG NPIKRLVFYF AEALKERIQQ ETGNALLGGM 180 GHQRRKTMQL QDALTMLHPA AIACHQQLPV SQVIQFASMQ AILDNVSTSS RIHLVDIGIK 240 NGLYWVIFMQ ALSVRHECPL ELLKITAVIS SSRESTEVIG KRLSSFAQSI NLPFSFNIVV 300 TSMEDLMEEV FSFETEETVA FFSHVYLSTM LAWPNRLAAL MGVMKKIRPR VMVVVEIEAH 360 TNSPALMDRF IEALFLYGSL FDCLENCMDR CSQFRKTIEA VYLWEGIQNL VTSEGELWIH 420 RHEKIDYWRD VFGRFGLVEM ELSKSSLSQA DLVLKKNPCG KFCTLAMNGK SLICGWKGAP 480 ISSVSAWEFR QE*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MNSIYARTLE QCEEATGESD NVKARTKSLP LASIELLKKC GSKRNHFGFE ENVELNLHVP  60
GNTGNRVLSV EDVMMIAKEK YIQYISHTPD DLSMLFHPLN NHYSGLSGEA AEDIELVVFL  120
LASAETFVNR QFHQMINLLS MCYQLATPDG NPIKRLVFYF AEALKERIQQ ETGNALLGGM  180
GHQRRKTMQL QDALTMLHPA AIACHQQLPV SQVIQFASMQ AILDNVSTSS RIHLVDIGIK  240
NGLYWVIFMQ ALSVRHECPL ELLKITAVIS SSRESTEVIG KRLSSFAQSI NLPFSFNIVV  300
TSMEDLMEEV FSFETEETVA FFSHVYLSTM LAWPNRLAAL MGVMKKIRPR VMVVVEIEAH  360
TNSPALMDRF IEALFLYGSL FDCLENCMDR CSQFRKTIEA VYLWEGIQNL VTSEGELWIH  420
RHEKIDYWRD VFGRFGLVEM ELSKSSLSQA DLVLKKNPCG KFCTLAMNGK SLICGWKGAP  480
ISSVSAWEFR QE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-32	146	487	33	374	GRAS family transcription factor containing protein, expressed

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222110.1	0.0	PREDICTED: DELLA protein RGL3-like
TrEMBL	A0A175YPC5	0.0	A0A175YPC5_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4694	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	2e-45	RGA-like protein 3

Link Out ? help Back to Top
Phytozome	DCAR_027004