PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026973
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 293aa    MW: 33710.4 Da    PI: 6.232
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026973genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l++++ ++G g+W++ ar  g++Rt+k+c++rw++yl
      DCAR_026973 20 RGPWTVEEDFSLINYISLHGEGRWNSLARAAGLKRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding49.41e-1573116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G+  W++Ia++++ gRt++++k++w++
      DCAR_026973  73 RGNITLEEQLLILELHSRWGNS-WSKIAQHLP-GRTDNEIKNYWRT 116
                      7999****************99.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.1671571IPR017930Myb domain
SuperFamilySSF466893.63E-3018114IPR009057Homeodomain-like
SMARTSM007173.0E-141969IPR001005SANT/Myb domain
PfamPF002491.2E-152067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-212174IPR009057Homeodomain-like
CDDcd001672.20E-102267No hitNo description
PROSITE profilePS5129418.21472122IPR017930Myb domain
SMARTSM007173.9E-1472120IPR001005SANT/Myb domain
PfamPF002491.6E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2275121IPR009057Homeodomain-like
CDDcd001671.89E-693116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNVKGEEDHE EMMKMEELRR GPWTVEEDFS LINYISLHGE GRWNSLARAA GLKRTGKSCR  60
LRWLNYLRPD VRRGNITLEE QLLILELHSR WGNSWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
HAKQLKCDVN SKKFKDTMRY LWMPRLAERI QAHSSATIVS NIANITESAS TALNYNTNTT  180
HNITESPQVT IPQAQATSNT ICSSSNATSF SSDSPISDFA HDYPNHGTDD FQAHIDTDHL  240
GFIESLISPS GYYHQDLNFQ AMEQNTEWMS GDLADNLWNV EDIWSLQQQF NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241711424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221947.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ2QZJ86e-91JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A175YPR30.0A0A175YPR3_DAUCS; Uncharacterized protein
STRINGPOPTR_0010s15970.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-82myb domain protein 78
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]