PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026970
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 311aa    MW: 34985.1 Da    PI: 6.5158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026970genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd  l +++ ++G g+W++ ar  g++Rt+k+c++rw++yl
      DCAR_026970 18 RGPWSVEEDFTLMNYISLHGEGRWNSLARSAGLNRTGKSCRLRWLNYL 65
                     89********************************************97 PP
2Myb_DNA-binding52.11.5e-1671114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      DCAR_026970  71 RGNITLEEQLLILQLHSRYGNR-WSKIAQCLP-GRTDNEIKNYWRT 114
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.1771369IPR017930Myb domain
SuperFamilySSF466895.62E-3116112IPR009057Homeodomain-like
SMARTSM007178.8E-141767IPR001005SANT/Myb domain
PfamPF002498.7E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-221972IPR009057Homeodomain-like
CDDcd001677.24E-112065No hitNo description
SMARTSM007174.7E-1570118IPR001005SANT/Myb domain
PROSITE profilePS5129417.56370120IPR017930Myb domain
PfamPF002497.7E-1571114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2373119IPR009057Homeodomain-like
CDDcd001674.05E-886114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSGIKGEEEM MIKEEVRRGP WSVEEDFTLM NYISLHGEGR WNSLARSAGL NRTGKSCRLR  60
WLNYLRPDVR RGNITLEEQL LILQLHSRYG NRWSKIAQCL PGRTDNEIKN YWRTRVQKHA  120
KQLKCDVNSK QFKDAVHYLW MPRLVERIEA ASVTSARSST ASVTSARSST ASVSANTYST  180
NNIGSSTDQV KMMPGTVVPN NSLQFLQPNN SGFTPENSCT TTTASSDSFG ISQVSTVSDL  240
TEYSCYNNYP PPPATNQQDF TESLISPSGY LNKGLYVDAI EQNNPLMACS EDLLDSFWDV  300
EDIWDVYRSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-26911218120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221060.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A175YR790.0A0A175YR79_DAUCS; Uncharacterized protein
STRINGPOPTR_0010s15970.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-75myb domain protein 112