PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026657
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 466aa    MW: 52102.8 Da    PI: 5.067
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026657genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind76.93.3e-241573260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl k+y+++ed++++e++sws++ nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+Y
   DCAR_026657 15 FLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 73
                  9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-26774IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-2811120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-221182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-201574IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-131538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-135365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-136678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDGAAASGGA GPAPFLLKTY DMVEDRSTDE IVSWSSSRNS FVVWNPPEFA RLLLPTYFKH  60
NNFSSFIRQL NTYMPLIFTT YLFRFPLTDA WNWFMHRPLT GLFDPERAAF EEEIDKISRE  120
KTTLETNLLR IKQQQPTAKL QLEELTQRIG GMEKRQENLL AFLEKVVQNP EFVEHLARKL  180
ESIDLSAYNK KRRLPHVEDS QVLREDSFVD NHSFSRPEFG NIFHQDFSNK LTLELSPAVS  240
DINLVSHSTQ SSSEGGESPQ RVSEGGIKDA LMRSVSTVYA PETLELSDTG TSFTFNMDPS  300
LAQKVGLAGS NSPKLQSLQQ CLSSSEEGEG HISCQLNLTL ASSSLHANES HYSAKLAQDS  360
EKSLVSRSIG SGNEVEFRVP QKSKNYSSDG ANLSSLHDTA TKNQEPETAP PRVNDVFWEQ  420
FLTERPGTSE TEQASPSARP NLHDEQEGRR QGNQNSRSTV DSLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-161731287Heat shock factor protein 1
5d5v_B3e-161731287Heat shock factor protein 1
5d5v_D3e-161731287Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220127.10.0PREDICTED: heat stress transcription factor A-5
RefseqXP_017220128.10.0PREDICTED: heat stress transcription factor A-5
TrEMBLA0A175YRW80.0A0A175YRW8_DAUCS; Uncharacterized protein
STRINGXP_002522803.11e-164(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-116HSF family protein